Scaffold Ga0065203_1462259

Overview

Basic Information

• Taxon OID: 3300004449
• Scaffold ID: Ga0065203_1462259
• Source Dataset Name: Marine microbial communities from Galveston Bay (CSEDA12C HDTS- fraction 12)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1784
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Galveston Bay, USA
• Coordinates
  • Lat. (^o): 29.5
  • Long. (^o): -94.76

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F058965	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065203_14622591	F058965	AGGCGG	MAFLGDFGKIFLGGARTGDVVTTLTGNPIIGASAQRGADLIGRIPSRGGTQQGQSVAVSQATQTTPQENQQSGTGGSQNVIIGLSDMGGGGFENVYSSQRPSMQAQNVGLPAIAGGAMAAGRGLYGLLFGGAAIAAPMIIDAFTGKPKKLRVTRKLQRDVKNAVMLLGIETVASQLGVEPEIVVYIMTKKIRNDGNYVTKAAVRKTRQTVRKMRTMCDLYDDLRPAAKRSPVRRRAATTKVTQIRN*
Ga0065203_14622592	F000713	AGGA	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAEATGTYSGNVVMNFTVNNAEFSRDVAVSEKVSGEAFGWNNTGYVLNDMVTTGQVRNRPVVTFTNNDASSVDIEVAIFIGG*