Scaffold Ga0065203_1462042

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065203_1462042

Scaffold Ga0065203_1462042

Overview

Basic Information
Taxon OID	3300004449 Open in IMG/M
Scaffold ID	Ga0065203_1462042 Open in IMG/M
Source Dataset Name	Marine microbial communities from Galveston Bay (CSEDA12C HDTS- fraction 12)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1688
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	Galveston Bay, USA
Coordinates	Lat. (^o)	29.5	Long. (^o)	-94.76	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020468	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065203_14620422	F020468	AGGAG	MPLVKKELTLAAGATSEQILAGTTYEYVGPNTRLVVAAATDDGTVGTVSNLAQPGVTMNFNVNNAEFARDASVSGQVEGEPFGWKGSYVMNDMVTTAVDRNRPIITFTNTTASLRRVNVAVFIGG*

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