NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065203_1460191

Scaffold Ga0065203_1460191


Overview

Basic Information
Taxon OID3300004449 Open in IMG/M
Scaffold IDGa0065203_1460191 Open in IMG/M
Source Dataset NameMarine microbial communities from Galveston Bay (CSEDA12C HDTS- fraction 12)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1245
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameGalveston Bay, USA
CoordinatesLat. (o)29.5Long. (o)-94.76Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001614Metagenome / Metatranscriptome663Y
F017291Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0065203_14601911F001614N/ATYGGLICGFGGFLTAIASLLYARARVAEFEASVRDLDWQQVSELSLDVAKLKKAAQKWQNNANAQEKVSQKDLIERALMERMMQQNSTVQPIRKVEM*
Ga0065203_14601913F017291AGGMPVLANNVSLTAGSSSVNVFDNTNYQFVNEGTEIRVSAAVVGANDGVQGSNVNYRFTINNTEFA

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