Scaffold Ga0065861_1052598

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1052598
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4195
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007835	Metagenome / Metatranscriptome	344	Y
F059864	Metagenome / Metatranscriptome	133	Y
F063771	Metagenome	129	Y
F067798	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10525981	F063771	GGA	MNIVAMNKLMFYTIVLILFSKYAFGNENGDLSGTTYPSDNVKVIEILDKIEQIEKEEDKVYWNKITTVKPKNAADQYCYVKVIIKESDNQLI
Ga0065861_105259810	F007835	AGG	MPFGPTTLRNKREEFVLQKIEYYKVNEYTGVGNWKRHYFDTYKEAVKMFKKLKEEKRKILIYACRNDELGELSTGLNDRFINE*
Ga0065861_10525987	F067798	N/A	LIDDWSAPNPRDAMYMRVFGMTFAEKKAQEELEFFIYENGEKKEVRKTKQVS*
Ga0065861_10525988	F059864	AGGA	MTYMYTKEQLFNEFKDVTKKDQSKKNETYTHRIAYLTALKEDMIKVPKNFSNLSINVVYNYRI*