Scaffold Ga0065861_1051941

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1051941
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2795
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035668	Metagenome / Metatranscriptome	171	Y
F059760	Metagenome / Metatranscriptome	133	N
F068428	Metagenome	124	Y
F077016	Metagenome	117	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_105194111	F068428	GAG	MFEDLKIPKRQTNCRIRTILSELSDKDKVIFEQAVMSPEWPYKTLSNELYKRGTKCSDAAIKHHREKRCSCLKD*
Ga0065861_10519412	F102815	AGGA	MKSPEELFLEAITAYRVWINCGKDFLNHADLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLELVK*
Ga0065861_10519414	F077016	AGG	MGDSAEKVREFYRRQGEERERARLIELLKEQNVIRNCGATGKLVFVNCNTLEVLYLKEVADV*
Ga0065861_10519416	F059760	AGGAG	MSQIETHDAISKAIQDSRDNAMEAVLSIIESYKKLQLPEIPKDSYDLGARDAVDTLVIHLTKFAEGLKAGRK*
Ga0065861_10519417	F035668	AGG	MSCNNCQGNCACRVNSINIFSKDYKAGKSEGQREEHTRTSDALIELERKEIISNAQLQAILDLILEKLTDQVDIL*