Scaffold Ga0065861_1025547

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1025547
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4705
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035726	Metagenome / Metatranscriptome	171	Y
F046311	Metagenome	151	Y
F056584	Metagenome	137	Y
F074735	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_102554710	F035726	AGGAG	MSLINKKETKVKYYSDLTKGEMVGVIKEQTSLTLPALERATKIDIESIAKALKVNANYKGA*
Ga0065861_10255477	F046311	N/A	MRTPRQQKNHEAWLRQRARVIKYLNENEMIVFFLLGLSFLVMVGFLAVAVA*
Ga0065861_10255478	F056584	AGGAG	MATLTVSSDDNKGVVVLKGARAWIEARAVAYRNKGFNVLIQWRQK*
Ga0065861_10255479	F074735	AGGAG	MNEKKLTRKELIEAIKSYEKMIRNDSLMKTFTRHMRGAFVVRLGRLNAELKRRK*