Scaffold Ga0065861_1012650

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1012650
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4279
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F097168	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10126501	F097168	N/A	MAISFKEEGHLYESNDKDKINWTSVTSFIGMFKPKFDREGQAKK
Ga0065861_10126504	F006666	N/A	VNPKKHKEFKKGIAEEVGVHQQVVDDFISFYYSKIRKKLSTLDYPRINVEGIGTFYLRKGRLETAIKKHKSMLGNVAKRTYNGYAKSESIISNIKANDYSFRAIRKRYTKQKRF*
Ga0065861_10126505	F004866	N/A	MAIVNKVDLKHKVGLHTSIKYQIVTYCFFNGITISKSDLEFLAILARNPNIEISKFCNLLTDLTIFKSSQSARNAISKAEKKLLINKKGNNKKTIKLNKYINVQSKGLVLLDYKILGSESKETQGV*
Ga0065861_10126507	F005243	N/A	MSKTKLEDQDPKLSKEELNARREEITAFYNDNIEHLKIQAKYEKLLANIEKARAERMQAQMFMAQQYADQKEGGVASDSEEAQAFKAAMEAAAKNID*