Scaffold Ga0065861_1006949

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1006949
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2013
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026158	Metagenome	199	Y
F047368	Metagenome	150	N
F052258	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10069494	F052258	N/A	MKKTKQTISERKLVNSEREAEAAMILFACILGGVILIVLAIAMG*
Ga0065861_10069495	F026158	AGGA	MLQFNSTSESRSSAVQCMEGFKDKIEMLMKAGDILDHCTRGRSTEKESRESRARSLKIWKDTGCPISEAAELGGANRASFHKWLIKEGHHTPKGK*
Ga0065861_10069496	F047368	AGGA	MPNECGAIKHAHTADEALKYLVVGNKKKGYKLKRSGVSIIILNIEEIKDT*