Scaffold Ga0065861_1001883

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1001883
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55394
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (16.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F010105	Metagenome / Metatranscriptome	308	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y
F056630	Metagenome / Metatranscriptome	137	Y
F063836	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100188310	F017335	N/A	MNIKSLTLKNKLSDEKTGQQYFDLTAPSFKYKRELGVKALHYVQQDQIGRIDKISQMYYGTDAYLDAICVVNNIFNPFTIQEGDVLAIPKLEQLDLVYKRPNPAERPSASLAQYVDTGRQSEKDQSRIQRLIQKAKTKKNGVKSPIPPNMLQQGQDAKVYEGGKIKLGANLPTRNSTNTES*
Ga0065861_100188318	F048317	N/A	MIRDIYSRDVEAPKYNDATLEVSDSLSQLIIKIENCLFTRKGEVLGAPSIGCNLDELIFSLVLNENTIQNNINSQITAYCLPDFAGFDVNTKVSFFSTLERDGALVDIFVNEQRVIGALF
Ga0065861_100188320	F022460	AGGAG	MATVKNNRTGFPSLYRATYEEGWELKNTGYDYSKTLLNKTLSNYMFRNRHLKTFLEDYLNPIMVFYVNKVKYLRIYYNFAVPKWYQKIN*
Ga0065861_100188337	F063836	N/A	MSLKNYNNFVSEEVDDFYKDLENSNKRLKLFTTFNKSELTKVKTDFSITEVPKKKFQPKVKGYKKINKDKGIF*
Ga0065861_10018834	F056630	N/A	MQKDNIKETPQEEVPELKYYQWIKGEKSGDVVTIKNIDDKWINFNEGGRLSKDLQNEFLQQLDSDIAGEFVKPQMSNNDPLNVSASPKNLQEVAISPIRVLFNKQKKNNKVKLLLEFPVNIPTKGVYEIMSTSFDKKEVNEQLQSFILDQLSKDEILDCLHNSVQSLIESKYKGE*
Ga0065861_100188342	F010105	N/A	MDYLHNYESLNEAKDMDTIKKMVLDYAEKKGKSKWKDLQNMIVTIKGMDPTDKANRGYFSSYFSGGSSFMKRLGHDKNIGKHGRGSNSHGLLMRPTKQDPRYLEKDGKDYIVKVWDGKSKLA*
Ga0065861_10018836	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYESNENDKNQYSYVKRFFFDLCDDLGLELGSKFDKTVLDINTQWGTHYEPTDKDIEFKIKRLKSELKELEEWKKNI*
Ga0065861_10018837	F008190	AGGA	MEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQSYVESLSNKPITYKIYHSPDITVNGTAELFDDIIEFE*
Ga0065861_10018838	F004606	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMRFLKQHFFDMNFRHMFENRARKMILKAEDFKTAKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISSRPFFKGPLSIDSVREFDARYKKGWADKFKKGNIDINKYLNSLS*