Scaffold Ga0065726_18133

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_18133
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10735
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F005745	Metagenome / Metatranscriptome	391	Y
F024789	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1813310	F024789	AGG	MTEPKIMKMDWRSAGYWPVWKDGKKVWVPKDDGSFNRNTQN*
Ga0065726_181332	F004475	AGGGGG	MTNWTDELNDKQKEDVWNFIVFTVKEIREQIAKDIEATIPLWKEKGLLKSRRTQKAFEASAAIARGQNERI*
Ga0065726_1813321	F005745	N/A	YLKKQVDNGISGIDIMHGHLKFLMLEAEQELDKACQIEEDNDYSDAMESMERKYWEGQCEALANLYSLTYDLSFAIAAKEAANE*