Scaffold Ga0065726

Basic Information
Taxon OID	3300004369 Open in IMG/M
Scaffold ID	Ga0065726_14778 Open in IMG/M
Source Dataset Name	Saline microbial communities from the South Caspian sea - cas-15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004369 Open in IMG/M

Scaffold ID

Ga0065726_14778 Open in IMG/M

Source Dataset Name

Saline microbial communities from the South Caspian sea - cas-15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15884
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (76.32%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15884

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (76.32%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location Name	Caspian Sea
Coordinates	Lat. (^o)	41.916215	Long. (^o)	50.672019	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Caspian Sea

Coordinates

Lat. (^o)

41.916215

Long. (^o)

50.672019

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F006885	Metagenome / Metatranscriptome	362	Y
F010599	Metagenome / Metatranscriptome	301	Y
F023339	Metagenome / Metatranscriptome	210	Y
F028423	Metagenome / Metatranscriptome	191	Y
F070870	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_147781	F023339	N/A	CIEGNTTNRKGGSQRNGGEVCRQLRAYKKNKKGVQISIVGFGRPKFKEAGQAKTADPVNKTKKCPTCGQVLK*
Ga0065726_1477819	F028423	AGGGGG	MDNLEKNELIQLVNFYKQKLSDAELNLLILQLEINKLNSVVLGLSKEPAKKSK*
Ga0065726_1477820	F006885	AGG	MEYLLIVGLTLLASWSIIKISNKKRMMFLKKHKYRQSHIYEIVKDIAPRQLFDKPKVITQSQKHIQKNMLKVVITEGKAYFILDNVFYVADAIDGRVNEETTKPLDTENMPTKELDKMLSILDDLKQGVGPNDSGSAGDKRV*
Ga0065726_1477825	F003688	N/A	MYTDNMRKVVHSIIPPKDFGVQIIDNDHFLTIKLDEKEFLHMVHDDKISALKYVVKLKKALEECGAIVLVTREAVK*
Ga0065726_1477827	F070870	GGAG	MKKKTKVLVLMVLSLLIAISLWAASNFKKIYDLDIFDVEED*
Ga0065726_1477829	F010599	GAG	MEIMLIIFFATLSFSFGIAYWSTLDKLKKSNFLMAELFIKNKALEDLTFQVKNSAGISDDEIHKENFIKFLSDSRDWAFEYIEQSQKTIKEVSEELKNKGLNNYSDKLLSLLPPTVGEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065726_14778

Overview

Ecosystem & Geography

Associated Families

Sequences