Scaffold Ga0065726_14009

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_14009
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17956
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035726	Metagenome / Metatranscriptome	171	Y
F037686	Metagenome	167	Y
F056584	Metagenome	137	Y
F063454	Metagenome / Metatranscriptome	129	Y
F103044	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1400914	F056584	AGGAG	MGKLIITSDNKKGMIVLRGKMSYIQERAVAYRKNGYNVLIQWEKKC*
Ga0065726_1400916	F035726	N/A	MTLIKKKTEKKTYYSDLTKSAMVKAIVEQTGLKLPALDRATKIDIENIAKALGVEADYKTTS*
Ga0065726_1400918	F063454	N/A	MKQLELQLKIKRTSSFDDVPTLKQLIDKQKETLKKLKDLEKERPKHLSNLSEKNYQLLKELHKGKL*
Ga0065726_1400921	F037686	AGGAG	MKNEKAKKVHKTKAQLVAELEVAMRLDKGFLNSLERANAQTIKRLIEQVS*
Ga0065726_1400925	F103044	AGGAG	MPAKFKASAKKYIKGVPAAKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELAKRKVQVVWVNPSEVQS*