Metagenome / Metatranscriptome Family F103044

Overview

Basic Information

• Family ID: F103044
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 101
• Average Sequence Length: 71 residues
• Representative Sequence: MPAKFKPSARKYVRGVPASKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS
• Number of Associated Samples: 83
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 88.46 %
• % of genes near scaffold ends (potentially truncated): 2.97 %
• % of genes from short scaffolds (< 2000 bps): 11.88 %
• Associated GOLD sequencing projects: 74
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (79.208 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (14.852 % of family members)
• Environment Ontology (ENVO): Unclassified (54.455 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (93.069 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 29.70%
  β-sheet: 3.96%
  Coil/Unstructured: 66.34%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03976	PPK2	16.83
PF03819	MazG	16.83
PF01165	Ribosomal_S21	0.99
PF13394	Fer4_14	0.99
PF13155	Toprim_2	0.99
PF01592	NifU_N	0.99
PF13202	EF-hand_5	0.99
PF04055	Radical_SAM	0.99
PF10614	CsgF	0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	16.83
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.99

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
All Organisms	root	All Organisms	20.79 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Viruses	superkingdom	All Organisms → Viruses	11.88 %
cellular organisms	root	All Organisms → cellular organisms	8.91 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.91 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.88 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.88 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	6.93 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.88 %
Saprospiria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria	6.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.88 %
Saprospirales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales	6.93 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.88 %
unclassified Saprospirales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales	6.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.88 %
Saprospirales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	6.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000117|DelMOWin2010_c10032106	All Organisms → Viruses → Predicted Viral	2542
3300002524|JGI24927J35514_1012333	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	667
3300003580|JGI26260J51721_1006439	All Organisms → Viruses → Predicted Viral	3579
3300003620|JGI26273J51734_10013953	All Organisms → Viruses → Predicted Viral	3269
3300004279|Ga0066605_10083922	All Organisms → Viruses → Predicted Viral	1355
3300004369|Ga0065726_14009	Not Available	17956
3300005433|Ga0066830_10008706	All Organisms → Viruses → Predicted Viral	1909
3300005837|Ga0078893_10056457	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	832
3300005837|Ga0078893_10649412	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	846
3300005941|Ga0070743_10042442	All Organisms → Viruses → Predicted Viral	1556
3300005941|Ga0070743_10062458	All Organisms → Viruses → Predicted Viral	1265
3300005942|Ga0070742_10014577	All Organisms → Viruses → Predicted Viral	2062
3300006025|Ga0075474_10034553	All Organisms → Viruses → Predicted Viral	1764
3300007539|Ga0099849_1001306	Not Available	11648
3300007539|Ga0099849_1006157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	5477
3300007539|Ga0099849_1026398	All Organisms → Viruses → Predicted Viral	2503
3300020185|Ga0206131_10225963	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	895
3300021085|Ga0206677_10008901	Not Available	7244
3300021085|Ga0206677_10027375	All Organisms → Viruses → Predicted Viral	3274
3300021364|Ga0213859_10000778	All Organisms → cellular organisms → Bacteria	14515
3300021957|Ga0222717_10000046	All Organisms → cellular organisms → Bacteria	96651
3300021959|Ga0222716_10210513	Not Available	1224
3300025151|Ga0209645_1139982	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	754
3300025674|Ga0208162_1002817	Not Available	8453
3300025704|Ga0209602_1071462	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1325
3300025870|Ga0209666_1019908	All Organisms → Viruses → Predicted Viral	4030

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.01%
Algae	Host-Associated → Algae	0.99%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	96.04%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.97%
Green Algae	Host-Associated → Algae → Green Algae	0.99%

Type

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	26.73%
Coastal	Environmental → Aquatic → Marine → Coastal	20.79%
Oceanic	Environmental → Aquatic → Marine → Oceanic	13.86%
Unclassified	Environmental → Aquatic → Marine → Unclassified	11.88%
Strait	Environmental → Aquatic → Marine → Strait	9.90%
Pelagic	Environmental → Aquatic → Marine → Pelagic	4.95%
Inlet	Environmental → Aquatic → Marine → Inlet	3.96%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.96%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.97%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.99%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	20.79%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	14.85%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.86%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	11.88%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	9.90%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	3.96%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.98%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.99%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.99%

Habitat

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	14.85%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	13.86%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	10.89%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	9.90%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.94%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	4.95%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	4.95%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.96%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	3.96%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	3.96%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.97%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.97%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	1.98%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.98%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.99%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.99%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.99%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.99%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.99%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.99%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline	0.99%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.99%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.99%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental
3300000947	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92	Host-Associated
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental
3300002524	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35	Environmental
3300003580	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA	Environmental
3300003620	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA	Environmental
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental
3300004279	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m	Environmental
3300004369	Saline microbial communities from the South Caspian sea - cas-15	Environmental
3300005433	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B	Environmental
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental
3300005942	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757	Environmental
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental
3300007665	Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3	Environmental
3300007667	Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3	Environmental
3300007692	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743	Environmental
3300007962	Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02	Environmental
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental
3300008052	Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02	Environmental
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental
3300009002	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573	Environmental
3300009024	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705	Environmental
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental
3300009142	Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3	Environmental
3300009599	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental
3300009677	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental
3300017706	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG	Environmental
3300017709	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27	Environmental
3300017710	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28	Environmental
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental
3300020051	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly)	Environmental
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental
3300021368	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550	Environmental
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental
3300021425	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284	Environmental
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental
3300024315	Seawater microbial communities from Monterey Bay, California, United States - 20D	Environmental
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental
3300024346	Whole water sample coassembly	Environmental
3300025070	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)	Environmental
3300025098	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)	Environmental
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental
3300025699	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)	Environmental
3300025704	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)	Environmental
3300025870	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)	Environmental
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental
3300027077	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)	Environmental
3300027278	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)	Environmental
3300027571	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (SPAdes)	Environmental
3300027751	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)	Environmental
3300028008	Seawater microbial communities from Monterey Bay, California, United States - 1D_r	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_101189182	3300000116	Marine	MPAKFKASARKYMRGVPANKLPMEHFYMHTMKKEELFEYINSKGTNMKPKVRQKCINELQRRG
DelMOWin2010_100321062	3300000117	Marine	MPAKFKASAKKYIRGVPASKLPVEHFYLKNTPKQELFEYINDRGSNMKPKVRQKCINELVRRGIKIEWVSPEVQS*
OpTDRAFT_100198552	3300000928	Freshwater And Marine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS*
BBAY92_100447881	3300000947	Macroalgal Surface	MPAKFKPSAKKYIRGVPARNLPMEHFYMKQTPLDELMKYINNPSGKPKIKQKCRNEVVRRGYRIVYKEVNDG*
JGI25132J35274_10747142	3300002483	Marine	MPAKFKASAKKYIRGVPASKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVKVVWVDPSEVQS*KHGINSTLVTRKRLH
JGI24927J35514_10123331	3300002524	Marine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKXELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS*
JGI26260J51721_10064396	3300003580	Marine	MPIKFKPSAKKYVRGVPASKLPMEHFYIKNTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIVIEWSEVQS*
JGI26273J51734_100139534	3300003620	Marine	MPAKFKPSARKYVRGVPASKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS*
Ga0055584_1023427332	3300004097	Pelagic Marine	FKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINSSRTKPKVRQKCLNELARRKVVVEWVDPSEVHSGK*
Ga0066605_100839222	3300004279	Marine	MPAKFKASAKKYIRGVPASKLPVEHFYIKNTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIKIEWVSPEVQS*
Ga0065726_1400925	3300004369	Saline	MPAKFKASAKKYIKGVPAAKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELAKRKVQVVWVNPSEVQS*
Ga0066830_100087066	3300005433	Marine	MPAKFKASAKKYIRGVPASKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVKVVWVDPSEVQS*
Ga0074648_10218015	3300005512	Saline Water And Sediment	MPAKFKSSTRKYVRGVPAAKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVIVEWVSPEVQS*
Ga0078893_100564574	3300005837	Marine Surface Water	KFKASAKKYIRGVPASKLPVEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVNVVWVDPSEVQS*
Ga0078893_106494123	3300005837	Marine Surface Water	ENIMPAKFKASARKYIRGVPANKLPMEHFYMHTMKKEELFEYINSKGTNMKPKIRQKCLNELVRRGIKIEWVEVQK*
Ga0070743_100424424	3300005941	Estuarine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYINSKGSNMKPKVRQKCLNELVRRGITIEWVEVQS*
Ga0070743_100624585	3300005941	Estuarine	MPVKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVQS*
Ga0070742_100145773	3300005942	Estuarine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELVRRGITIEWVEVQS*
Ga0075474_100345536	3300006025	Aqueous	MPAKFKASAKKYIRGVPASKLPVEHFYLKNTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIKIEWVSPEVQS*
Ga0098048_10408211	3300006752	Marine	MPTKFKPSAKKYIRGVPASKLPMEHFYIKQTPKEELFEYINSKGTNMKPKVRQKCINELVRRGIKIEWVEVQS*
Ga0098048_10850952	3300006752	Marine	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVKVVWVDPSEVQS*
Ga0098055_10536971	3300006793	Marine	KFKPSAKKYVRGVPASKLPMEHFYIRNTPKQELFDYINDRGSNMKPKVRQKCLNELVRRGINIEWVEVQS*
Ga0098046_10258572	3300006990	Marine	MPTKFKPSAKKYIRGVPAGKLPMEHFYIKQTPKEELFEYINAKGTNMKPKVRQKCINELVRRGIKIEWVEVQS*
Ga0098046_10854921	3300006990	Marine	KKYLRGVPASKLPMEHFYIKQTPKEELFEYINSKGTNMKPKVRQKCINELVRRGIKIEWVEVQS*
Ga0099849_10013062	3300007539	Aqueous	MPTKFKPSAKKYIRGVPAGKLPTEHFYIKQTPKEELFAYINSGSRAKPKIRQKCLNELVRRGIKIEWVEVQS*
Ga0099849_10061571	3300007539	Aqueous	MPAKFKASAKKYIRGVPASKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVNVVWVDPSEVQS*
Ga0099849_10263986	3300007539	Aqueous	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVNVVWVDPSEVQS*
Ga0102908_10976652	3300007665	Estuarine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKGELFEYINSKGANMKPKVRQKCINELQ
Ga0102910_10395631	3300007667	Estuarine	MPIKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIVIEWSEVQS*
Ga0102823_11276971	3300007692	Estuarine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELVRRGVTIEW
Ga0102907_10366555	3300007962	Estuarine	MPAKFKPSARKYVRGVPASKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELVRRGIVIEWSEVQS*
Ga0105748_103140352	3300007992	Estuary Water	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS*
Ga0102893_11442321	3300008052	Estuarine	MPAKFKPSAKKYIRGVPASKLPVEHFYIKNTPKQELFEYINSTVVNMKPKIRVKCINELQRRGINIEWVTPEVQS*
Ga0102960_10641901	3300009000	Pond Water	MPIKFKPSAKKYVRGVPASKLPMEHFYIKNTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIKIEWVEVQS*
Ga0102810_11024921	3300009002	Estuarine	KFKPSAKKYVRGVPASKLPMEHFYIKDTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVQS*
Ga0102811_10090434	3300009024	Estuarine	MPAKFKPSARKYVRGVPANKLPMEHFYLTQTPKGDLFEYINSKGSNMKPKVRQKCLNELVRRGITIEWVEVQS*
Ga0102811_10379012	3300009024	Estuarine	MPIKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVQS*
Ga0115566_104077522	3300009071	Pelagic Marine	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINSSRTKPKVRQKCLNELARRKVVVEWVDPSEVHSGK*
Ga0102815_1001629710	3300009080	Estuarine	MPVKFKPSAKKYVRGVPASKLPMEHFYIKNTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVQS*
Ga0102812_100474664	3300009086	Estuarine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYINSKGSNMKPKVRQKCINELIRRGITIEWVEVQS*
Ga0102885_11410981	3300009142	Estuarine	MPVKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEW
Ga0115103_17314033	3300009599	Marine	MPAKFKPSAKKYIRGVPASKLPMEHFYMHTTKKGELFEYINDKGQNMKPKVRQKCINELQRRGIK
Ga0115104_111294551	3300009677	Marine	MPAKFKPSAKKYIRGVPASKLPMEHFYIKNTPKQELFEYINSTGVNMKPKVRQKCLNELIRRGITIEWVEVQS*
Ga0098049_12092201	3300010149	Marine	MPAKFKPSAKIYKRGVPASKLPTQHFYLKDTSKEELFAYINSGSRAKPKIRQKCLNELVRRGIKIEWVEVQS*
Ga0129348_11483292	3300010296	Freshwater To Marine Saline Gradient	MPAKFKASAKKYIRGVPASKLPVEHFYLKTMSKEALFEAINNTRTKPKVRQKCLNELARRKVQVVWVNPEEVQS*
Ga0181377_10666892	3300017706	Marine	MPTKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQELFEYINDRGANMKPKIRQKCINELVRRGITIEWVEVQS
Ga0181377_10677371	3300017706	Marine	MPTKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQEFFDYINDRGANMKPKIRQKCINELVRRGITIEWVEVQS
Ga0181387_10041843	3300017709	Seawater	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYINSKGSNMKPKVRQKCLNELIRRGIKIEWVEVQS
Ga0181403_11147371	3300017710	Seawater	KFKPSAKKYVRGVPASKLPMEHFYIKNTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIVIEWSEVKS
Ga0181391_10467823	3300017713	Seawater	MPIKFKPSAKKYVRGVPASKLPMEHFYMHTMKKEELFEYINNKGQNMKPKVRQKCVNEL
Ga0181391_10488105	3300017713	Seawater	YKESNMPAKFKPSAKKYIRGVPASKLPMEHFYLKNTPKEELFEYINSTGVNMKPKIRVKCINELQRRGINIEWVTPEVQS
Ga0181390_10540013	3300017719	Seawater	MPVKFKPSAKKYVRGVPASKLPMEHFYMHTMKKEELFEYINDKGQNMKPKVRQKCVNELQ
Ga0181388_10071883	3300017724	Seawater	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVKQKCLNELIRRGITIEWVEVQS
Ga0181419_10934153	3300017728	Seawater	PSARKYVRGVPANKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS
Ga0181431_10287913	3300017735	Seawater	MPTKFKPSAKKYVRGVPASKLPMEHFYIKNTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIVIEWSEVKS
Ga0181422_12134992	3300017762	Seawater	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYINSTGANMKPKIRIKCINELQRRGINIEWVTPEV
Ga0181385_11510652	3300017764	Seawater	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYVNSKGSNMKPKVRQKCLNELIRRGIKIEWVEVQS
Ga0181585_105573681	3300017969	Salt Marsh	MPAKFKASAKKYIRGVPASKLPVEHFYLKTMSKEALFEAINNTRTKPKVRQKCLNELARRKVQVVWVNPEEVQS
Ga0181591_108850341	3300018424	Salt Marsh	MPAKFKPSAKKYIRGVAPSKLPMEHFYLKQTPKEELFKYINNPSGKPKIKIKCRNELVR
Ga0181566_104172091	3300018426	Salt Marsh	KASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINNTRTKPKVRVKCINELQRRGIKIEWVKPSEVQS
Ga0181555_12622521	3300020051	Salt Marsh	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINSNRTKPKVRVKCINELQRR
Ga0206131_102259631	3300020185	Seawater	MPAKFKASAKKYIRGVPASKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVIVEWVSPEVQS
Ga0211576_103326331	3300020438	Marine	MPAKFKPSAKKYIRGVPASKLPMEHFYLKNTPKEELFEYINSTGVNMKPKIRVKCINELQRRGIKI
Ga0206677_1000890111	3300021085	Seawater	MPAKFKPSAKKYIRGVPASKLPMEHFYLKNTPKETLFEYINSTGANMKPKIRVKCINELQRRGINIEWVTPEVQS
Ga0206677_1002737510	3300021085	Seawater	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELIRRGIKIEWVEVQS
Ga0206682_100287857	3300021185	Seawater	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS
Ga0213859_1000077823	3300021364	Seawater	MPAKFKASAKKYIRGVPASKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVNVVWVEPSEVQS
Ga0213859_101887453	3300021364	Seawater	MPAKFKASAKKYIRGVPASKLPMEHFYLKTMSKEALFEAINNTRTKPKVRQKCLNELARRKVQVVWVNPEEVQS
Ga0213860_1000434213	3300021368	Seawater	MPAKFKASAKKYIRGVPASKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVNVVWVNPSEVQS
Ga0213865_1000385918	3300021373	Seawater	MPAKFKPSAKVYKRGVPASKLPVQHFYLKQTPKEELFAYINSGSRAKPKIRQKCLNELVRRGIKIEWVEVQS
Ga0213869_100406503	3300021375	Seawater	MPIKFKPSAKKYIRGVPASKLPMEHFYMHTMKKEELFEYINSKGTNVKPKVRQKCINELQRR
Ga0213869_100409974	3300021375	Seawater	MPTKFKPSAKKYIRGVPAGKLPTEHFYIKQTPKEELFAYINSGSRAKPKIRQKCLNELVRRGIKIEWVEVQS
Ga0213866_1000724411	3300021425	Seawater	MPAKFKASAKKYIRGVPASKLPYEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVNVVWVDPSEVQS
Ga0213866_101785404	3300021425	Seawater	MPTKFKPSAKKYIRGVPAGKLPMEHFYIKQTPKEELFEYINSKGTNMKPKVRQKCINELVRRGIKIEWVEVQS
Ga0213866_103492301	3300021425	Seawater	AKKYIRGVPASKLPMEHFYLHTMKKEELFEAINSNRTKPKVRVKCINELQRRGIKIEWVKPSEVIQ
Ga0222717_10000046124	3300021957	Estuarine Water	MPIKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVQS
Ga0222716_102105131	3300021959	Estuarine Water	SAKKYIRGVPASKLPMEHFYIKNTPKQELFEYINSTGVNMKPKVRQKCINELQRRGINIEWVTPEVQS
Ga0222716_103513021	3300021959	Estuarine Water	RGVPASKLPMEHFYMHTTKKEELFEYINDKGQNMKPKVRQKCINELQRRGIKIEWVEVQS
(restricted) Ga0233432_100273023	3300023109	Seawater	MPVKFKPSAKKYVRGVPASKLPMEHFYIKNTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVQS
(restricted) Ga0233432_100474811	3300023109	Seawater	MPAKFKPSARKYVRGVPASKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELV
(restricted) Ga0233438_101355792	3300024255	Seawater	MPAKFKASAKKYIRGVPASKLPVEHFYIKNTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIKIEWVSPEVQS
(restricted) Ga0233438_102253713	3300024255	Seawater	MPAKFKPSARKYVRGVPASKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS
Ga0228618_10883611	3300024315	Seawater	NMPAKFKPSAKKYIRGVPASKLPMEHFYLKNTPKETLFEYINSTVANMKPKIRVNCINELQRRGIKIEWVTPEVQS
Ga0244777_100276681	3300024343	Estuarine	MPVKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQVLFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVQS
Ga0244775_101352963	3300024346	Estuarine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYINSKGSNMKPKVRQKCINELIRRGITIEWVEVQS
Ga0208667_10255671	3300025070	Marine	MPTKFKPSAKKYIRGVPAGKLPMEHFYIKQTPKEELFEYINAKGTNMKPKVRQKCINELVRRGIKIEWVEVQS
Ga0208434_10345351	3300025098	Marine	MPTKFKPSAKKYIRGVPASKLPMEHFYIKQTPKEELFEYINSKGTNMKPKVRQKCINELVRRGIKIEWVEVQS
Ga0208793_10714011	3300025108	Marine	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVKVVWVDPSEVQS
Ga0209645_11399823	3300025151	Marine	MPAKFKPSARKYIRGVPASKLPVEHFYLKQTPKEELFAYINSGSRAKPKIRQKCLNELVRRGIKIEWVEVQK
Ga0208149_10131126	3300025610	Aqueous	MPAKFKASAKKYIRGVPASKLPVEHFYLKNTPKQELFEYINDRGSNMKPKVRQKCLNELVRRGIKIEWVSPEVQS
Ga0208162_10028176	3300025674	Aqueous	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVNVVWVDPSEVQS
Ga0209715_11916822	3300025699	Pelagic Marine	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFDYINSTGNNIKPKVRQKCINELQRRGIK
Ga0209602_10714621	3300025704	Pelagic Marine	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINNTRTKPKVRQKCLNELARRKVIVEWVSPEVQS
Ga0209666_101990810	3300025870	Marine	MPAKFKPSARKYVRGVPASKLPMEHFYLKQTPKAELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS
Ga0209309_102554552	3300025881	Pelagic Marine	MPAKFKASAKKYIRGVPASKLPMEHFYLHTMKKEELFEAINSSRTKPKVRQKCLNELARRKVVVEWVDPSEVHSGK
Ga0208941_10135343	3300027077	Marine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKGELFEYINSKGSNMKPKVRQKCLNELIRRGITIEWVEVQS
Ga0208439_10869813	3300027278	Estuarine	MPAKFKPSAKKYIRGVPASKLPMEHFYLKNTPKEELFEYINSTGVNMKPKIRVKCINELQRRGINIEWVTPEVQS
Ga0208897_10382031	3300027571	Estuarine	AKKYVRGVPASKLPMEHFYIKNTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVQS
Ga0208304_100245501	3300027751	Estuarine	MPAKFKPSARKYVRGVPANKLPMEHFYLKQTPKAELFEYINSKGSNMKPKVRQKCLNELVRRGITIEWVEVQS
Ga0208304_101051711	3300027751	Estuarine	MPAKFKPSAKKYIRGVPASKLPMEHFYMHTTKKEELFEYINDKGQNMKPKVRQKCINEL
Ga0228674_11821071	3300028008	Seawater	MPVKFKPSAKKYVRGVPASKLPMEHFYIKDTPKQELFEYINDRGANMKPKVRQKCLNELVRRGIVIEWSEVKS