Scaffold Ga0065726_13385

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_13385
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20025
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (27.78%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F006866	Metagenome / Metatranscriptome	363	N
F008239	Metagenome / Metatranscriptome	336	Y
F010834	Metagenome / Metatranscriptome	298	Y
F019312	Metagenome / Metatranscriptome	230	N
F031655	Metagenome / Metatranscriptome	182	Y
F036928	Metagenome / Metatranscriptome	169	N
F039095	Metagenome	164	N
F046627	Metagenome	151	N
F061808	Metagenome	131	N
F063568	Metagenome	129	N
F081234	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1338511	F006866	N/A	MEEQAKSANVLINRNNLNNLFELLVQVHLRGQLSRDEQAFLKNFIELPEAPTRENRQARRANTQAIKKLFREEAKRKRDE*
Ga0065726_1338512	F005010	N/A	MIRKYKHIREVEKFLSMLMIDNVNLSIQASRFGWTTELQDTITNNALLIRKYQRRLRLIKM*
Ga0065726_1338515	F008239	N/A	MREILLEMYEKLWNADKDKFAWNVILKDTLEKLETLNTKEI*
Ga0065726_1338519	F061808	N/A	MNKFRVFVKGKFDVVFDTIEKARDCRRALQQLKYEGIEIIITKEDIDPR*
Ga0065726_1338522	F019312	N/A	MKHTEAIYKAQIAFDEALSDKETIDQLLHIDAQMYANTGIETSKAEMESIKRASAFIYRLIKGIDYDKGQRFIQAMGLTR*
Ga0065726_1338523	F046627	N/A	MSFVKGDIGEDLWCDYIKKRGHTDIIRAPKIKFYDWDVKSTYQKNELTFEVKHDSKAYWWADRRGTPEQPNLYIEFKNTNKDEDSGIKASKAIYYIYILKRDECNTAFVFERKGLLNHLEQVTYKIVGNSATGDDNALGWIPPLESLVTQPFFVNKILL*
Ga0065726_1338524	F063568	AGAAGG	MSNTKISKLLLCWLWTQGHKIKEYKEAEGITTVHDKNEYKFDVSGNYGGYRVEYTHKTFSFYDGDRKLKDTDLNEFC*
Ga0065726_1338527	F031655	N/A	MNFAIDIAPLAGLLIGVNYWNSEMDDDYEKPKYHSLQLCFGLFAIVMTWATEE*
Ga0065726_1338529	F039095	N/A	MDELKDEDYRWVRGGSKSIALLWLRQKNQDLMQIANALKPQDPSNEYEMDIFIDLVSIYSAIDASIGMVEDVQQMVWAAEAKNADLKLTIRNLTRKINAYEERFDNLNEHLK*
Ga0065726_133853	F036928	N/A	MYSKLGYLIKALKETNERDEDIKVAKGKYQYPRTLIEALGKWR*
Ga0065726_1338533	F010834	AGAAGG	MKKDLTLHLKLPKTISLNALYAGKHWTFRKRIKDEYKKIIEAELARYDHHIAQSMSIHIRYNTRADVDNLVLVSKFTADTLVSNEWIADDNPKHYNRLTITFDPEVEKNYCEVEVRLKNAYERN*
Ga0065726_1338535	F081234	N/A	MSTKDQYIDLCEARVDALVNEVRLLKEFIVRDYATKGISGQMAMDLFKAFKENENNSQDKAD*