Scaffold Ga0065726_11937

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_11937
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28759
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (51.06%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002876	Metagenome / Metatranscriptome	524	Y
F002985	Metagenome / Metatranscriptome	515	Y
F009805	Metagenome / Metatranscriptome	312	Y
F022857	Metagenome	212	Y
F043349	Metagenome	156	Y
F053230	Metagenome	141	Y
F073444	Metagenome / Metatranscriptome	120	Y
F090274	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1193710	F001018	N/A	MTQITHTKLKELNVIQLYEHYGALERSLPLLTPESQELAKAELEACVALRSEKIDRIYYAMASHEDAIERIKKEKLLILKAQKHHETQVTGLKKLLSYLRRVLPADSNKITGRNYQFTLSRKKELTVEIKSDPEFWSSDERTNFCIQEEVTTTKKTVVRSMSGEILDTKIVPSTKTTVLPNLDAIRNAYQNGQQLPYGVKVLQEYSVRSKRIYGEPQLEMEASEYPGELLPEVGTADES*
Ga0065726_1193711	F073444	AGGA	MNCHQHAVKDFDLQIEMNELEMGMLNDANGEVLPYNESRMDELEQKKLKLLMGKRYNQNATNAYWYYLERSSK*
Ga0065726_1193714	F022857	N/A	MDAITVPKLTVSFAVDLELDYDSFGGKTPEEIAASLQDEMDDLLFEASSSVVGVYTSITAINSDD*
Ga0065726_119372	F002985	N/A	MSYVIAAWKNGIPHAISACRNTGQFQLLPLDSDVALNKIYSHPYRAGAQQILAWINKNDEQLAGQELSIQDEARFRR*
Ga0065726_1193735	F009805	N/A	MEVYVSVGEWMNSLMSRMANAVDGDCFYLPTQMHLHAFMLLQAEKFADKNFKVEVKQ*
Ga0065726_1193742	F090274	N/A	MGSESIQVATSKEDWDDFFAEWDDPQDAIDSMDSYADRVRVACELSGRQIQKANQRLDGATQEKIRVTIEFEFDR*
Ga0065726_1193743	F043349	AGG	MEQRKKKSVSRLSSNLTGKFGPRTQAIAIRQVRQWVEELPAGDMIALRCESALPDKQFRVWKKWFTKHEDIRWEVKEEFKAFWFYKSSPIE*
Ga0065726_1193747	F002876	N/A	MACKKSELVSAINSFGSARTTGDGNLIGFSVNLIGQLIDTLEFAPEEELVAEEEVKEAEPV*
Ga0065726_119379	F053230	N/A	MFESILATVLPIVQDILWTACAALLAYVLNKVQSNIQNI*