Scaffold Ga0065726_11150

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_11150
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38836
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (60.34%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011848	Metagenome / Metatranscriptome	286	Y
F070146	Metagenome / Metatranscriptome	123	N
F071254	Metagenome	122	Y
F105295	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1115012	F011848	AGG	MSSKTPYEIRLDLVREAREILQAKAKNPEDMPTTEDVLKEAERLNEFVSKKPFDKN*
Ga0065726_1115023	F070146	AGGAG	MLQYRILGNQPEPTGLLKGHEIHDFQYRTRDAEAFEKGKKLVEKFVADLDFVPADDEYYVIDDPMQITLGEYEDTGKFPGMNSLVLQLEKLGFYTKSASYRTAEYRPEFARAFNRAVSDEGNTNRDGSIDWNFVDADLYGSEHRPNSDKEYYAIYESIAIQYDLANGIIQ*
Ga0065726_1115048	F105295	AGGAG	MVDSVKNYGIAGASTTIELGKQGAVIDASDSAIISLKDKDGALEEIAIANGTASSHAVTKGQMDATGSQKLKFVETTVNYNSGNTSVGTFASNSTIQSVVVEKGVGNWTDYNSTTEITVGDSGDVDRLFAGFDPAGGQIAFDNDHTYSADTEVYVYVTQGGASAGTAKVRIWYSGTLS*
Ga0065726_111506	F071254	AGG	MSKKTNKPATRSHLQLFTHDSPFGHKVQKDKTKIIPRKEKYKDKEND*