Scaffold Ga0066233_104260

Overview

Basic Information

• Taxon OID: 3300004322
• Scaffold ID: Ga0066233_104260
• Source Dataset Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3A
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 573
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001346	Metagenome / Metatranscriptome	718	Y
F001758	Metagenome / Metatranscriptome	640	Y
F026580	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066233_1042601	F001758	N/A	VTGERLGQAGWLSPSQAGSQGSGAEAGFTSSSGGVRAPSVYAKEGLNGEER*
Ga0066233_1042602	F026580	GAG	MRNRSESSQVARAGFELGRIAVTQRVFGCYCASARADGSGGLRKEVSQMKDAERRDKLSVRAGEDTWCGQDP*
Ga0066233_1042603	F001346	GGAGG	VVWAGPVKTFRKVGDVKNNTADLWTKGNLRVKRRDPWHRANALSKAAADLELNGEDADKKTQTCLDLVRKPVAQ