NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004322

3300004322: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3A



Overview

Basic Information
IMG/M Taxon OID3300004322 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110188 | Gp0091626 | Ga0066233
Sample NameSediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3A
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22868546
Sequencing Scaffolds7
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)mangrove biomeintertidal zonesediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationSao Paulo State, Brazil
CoordinatesLat. (o)-23.8553Long. (o)-46.1394Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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