3300004322: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3A

Overview

Basic Information

• IMG/M Taxon OID: 3300004322
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091626 | Ga0066233
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3A
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22868546
• Sequencing Scaffolds: 7
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001233	Metagenome / Metatranscriptome	741	Y
F001346	Metagenome / Metatranscriptome	718	Y
F001758	Metagenome / Metatranscriptome	640	Y
F003269	Metagenome / Metatranscriptome	496	Y
F008255	Metagenome / Metatranscriptome	336	Y
F014854	Metagenome / Metatranscriptome	259	Y
F016975	Metagenome / Metatranscriptome	243	Y
F026580	Metagenome / Metatranscriptome	197	Y
F030100	Metagenome / Metatranscriptome	186	Y
F067247	Metagenome / Metatranscriptome	126	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066233_101355	All Organisms → cellular organisms → Bacteria	852
Ga0066233_102080	Not Available	733
Ga0066233_102119	Not Available	727
Ga0066233_103477	Not Available	614
Ga0066233_104017	Not Available	585
Ga0066233_104260	Not Available	573
Ga0066233_106069	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066233_101355	Ga0066233_1013552	F067247	VKKLFSIGIVLALLVTFVVPVAIAAQDECCEWTPPNAVPLPDRTTKTLAGATMWTLLGVTDIMGKAVCATTGQMAANLGGWSDELGVIGVDVTVAALKGIGGLIDGVIGQFLPDFADLGAGVVDLINGIADALAGATEGEP
Ga0066233_102080	Ga0066233_1020801	F003269	VLSGKDAGKRHRRVFAWLAGRWRKHWPKRAEKPHSKSSDREALDGPATRPETPLAVENSV
Ga0066233_102080	Ga0066233_1020802	F030100	LAAVNRLSLVVSRIIPGDWGKVGSGWLAQPLLEHVEGHEDGGRIHQFLWRCSRIVSKREKGTARSGAMRNRSELSEVGRGSFGSG*
Ga0066233_102119	Ga0066233_1021192	F001233	ERLASEISRIIPGDWGKVESGWLAWPLLSWTAGFGGGGRIHQFLWRCSRAVSNAKRNLAARSDKKPLRVG*
Ga0066233_103477	Ga0066233_1034772	F016975	VAKTWKEIADVSWSGSQAGGATTSQSELKSLTRSSGGNALDGPATRPETPLAVENSVG
Ga0066233_104017	Ga0066233_1040171	F014854	*DGQR*SKEKSQVVSRIIPGNWGKVEPGWLARPLLDRIGRFGGGGRIHQFLWSRSHAVSFAKRNLAARSDKKPFRVGSSSSGRFRAWVNRSYPEGKWLLLCISTGRVTLADSINRLKPPNESH*KVDKRSARTGKITQTRQIA*KTSERRRCYKRHRWPVSERQPES*
Ga0066233_104260	Ga0066233_1042601	F001758	VTGERLGQAGWLSPSQAGSQGSGAEAGFTSSSGGVRAPSVYAKEGLNGEER*
Ga0066233_104260	Ga0066233_1042602	F026580	MRNRSESSQVARAGFELGRIAVTQRVFGCYCASARADGSGGLRKEVSQMKDAERRDKLSVRAGEDTWCGQDP*
Ga0066233_104260	Ga0066233_1042603	F001346	VVWAGPVKTFRKVGDVKNNTADLWTKGNLRVKRRDPWHRANALSKAAADLELNGEDADKKTQTCLDLVRKPVAQ
Ga0066233_106069	Ga0066233_1060691	F008255	MIVQMQEFVADSTSALSSQVRKMRKESVETVREAAVDSAENLKSLKSPVRTLARSGIKLTGVSHTTVASLIELQSEVLTSAISDAALRLERAARADSVIDLVREQIEMIPATRTRIVEDAQRTASIFKHAGRDLRGVVTHLYEKVVEPTEAKAAPAKTAKR