Scaffold Ga0066605_10021597

Overview

Basic Information

• Taxon OID: 3300004279
• Scaffold ID: Ga0066605_10021597
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3192
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F003647	Metagenome / Metatranscriptome	475	Y
F037813	Metagenome / Metatranscriptome	167	Y
F101868	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066605_100215971	F000918	N/A	MYRQYKTNQQAWDEVSREFNESKRRTKICIEMFGQENLIGLNDEQRNLFWESI*
Ga0066605_1002159710	F003647	N/A	MVMCEWTLADVKNRASNKAFAKVTMLKLDIDDYKRSLINGTYGGITYEEAEQVLEGYKTELKVWNYITELIEKQ*
Ga0066605_100215973	F101868	N/A	MEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEAKLSDFTNKIR*
Ga0066605_100215979	F037813	N/A	MKQSNLYEMLKPEYKTSIATKYANRQHSHAALIRALSEEYYFTEIKYGDAFDIMNTCELDFLGDAFNKAY*