NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066639_10560809

Scaffold Ga0066639_10560809


Overview

Basic Information
Taxon OID3300004210 Open in IMG/M
Scaffold IDGa0066639_10560809 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)624
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017787Metagenome238Y
F068436Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0066639_105608091F068436N/AMEKEKKSAENAQGKGIVNEIYAEIEKKNREYEKRMNLIEAIF
Ga0066639_105608092F017787N/AKEEYANMEKIIREGEYSETKEKYTLGVRARFEVNFQYFEISKHPKFDDECVYLSRKFFFLKNNISDDEKEKIEKFENNILNKFYYGK*

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