Scaffold Ga0063455_100746389

Overview

Basic Information

• Taxon OID: 3300004153
• Scaffold ID: Ga0063455_100746389
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 668
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: USA: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001935	Metagenome / Metatranscriptome	615	Y
F033892	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063455_1007463891	F033892	N/A	GEIRLQCYATWDTPEQLEGFLERGYTLERMLADVGAPAPERTLIMEKVF*
Ga0063455_1007463892	F000280	AGAAGG	MEEQEPDRRPARPLEGYRDVGDTVRHGRANVIRAWIILGVLVVGYLTWTLIVYFFEPGLR
Ga0063455_1007463893	F001935	N/A	MWVKHLTSLQFLTYVAFFTVVVAALMRFMPGAPPPVRTEPYSPEELGRHDRRLGKYFVAGGGFLVLGGVHMVLKNLPWPARWLAGAGYAGHLVRDLSNTHVMIVGGGTL