Scaffold Ga0064458_1279178

Overview

Basic Information

• Taxon OID: 3300004090
• Scaffold ID: Ga0064458_1279178
• Source Dataset Name: Eurytemora affinis associated microbial communities from Braddock Bay, NY (Lake Ontario)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland School of Medicine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1134
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Unclassified → Unclassified → Unclassified → Eurytemora Affinis Associated → Eurytemora Affinis Associated Microbial Communities From Braddock Bay, Ny (Lake Ontario)

Source Dataset Sampling Location

• Location Name: Braddock Bay, NY, USA
• Coordinates
  • Lat. (^o): 43.30746
  • Long. (^o): -77.707341
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065796	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0064458_12791781	F065796	N/A	LRAGPQDYNMRMKTASMFRTNIEDIFNTCSGANDILQVMLPDEKKPEMNDQTSELKTRMDILAKIDERLAFIDDFNKRLNIFDVGVKEMENWLGEGRKRLDLIKTPPEEMSPEDRVTKSMELQEDLNKKSEFTKKLEVEKDDIFPKSGEKVSSDAKKFIERLKKVRTTLNALDDEVSAECAKFSEDVKFWAEFQTGLKVFEPWMKNAELRKISGLKKPSSLVEACEILGDSKNLQDEAEAKLRVLEEAASAAQKMTSHHEADIKVEGFKKRWTVVHECFQEWVARMTTLVECWNKLDGNVGELSSWVATKDSSAPEGSSEISIEQLETQLNTLKTMFAEKQKLVSDLDAYGPAGAVVPAPVAVAPVEAPAAELAAEV