Scaffold Ga0064458_1198663

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0064458_1198663

Scaffold Ga0064458_1198663

Overview

Basic Information
Taxon OID	3300004090 Open in IMG/M
Scaffold ID	Ga0064458_1198663 Open in IMG/M
Source Dataset Name	Eurytemora affinis associated microbial communities from Braddock Bay, NY (Lake Ontario)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	611
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Unclassified → Unclassified → Unclassified → Eurytemora Affinis Associated → Eurytemora Affinis Associated Microbial Communities From Braddock Bay, Ny (Lake Ontario)

Source Dataset Sampling Location
Location Name	Braddock Bay, NY, USA
Coordinates	Lat. (^o)	43.30746	Long. (^o)	-77.707341	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037597	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0064458_11986631	F037597	AGGAG	MNPEMEFKEFEPRFKSAKPRFKFSAGLNLETFDTIFSGTNHI*

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