NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063354_1069163

Scaffold Ga0063354_1069163


Overview

Basic Information
Taxon OID3300004069 Open in IMG/M
Scaffold IDGa0063354_1069163 Open in IMG/M
Source Dataset NameCombined assembly of 1362B_J2.571 and 1362A_J2.573
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Oceanic, Basalt-Hosted Subsurface Hydrothermal Fluid → Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field

Source Dataset Sampling Location
Location NameJuan de Fuca Ridge flank, Pacific Ocean
CoordinatesLat. (o)47.76Long. (o)-127.76Alt. (m)Depth (m)454
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093835Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0063354_10691634F093835N/AKAFDDFMNHAETEIDSYKKRKEAEDYTNKFFERKAAELEVTVDYYMQEFL*

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