3300004069: Combined assembly of 1362B_J2.571 and 1362A_J2.573

Overview

Basic Information

• IMG/M Taxon OID: 3300004069
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0090290 | Gp0057564 | Ga0063354
• Sample Name: Combined assembly of 1362B_J2.571 and 1362A_J2.573
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 390457103
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Oceanic, Basalt-Hosted Subsurface Hydrothermal Fluid → Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Juan de Fuca Ridge flank, Pacific Ocean
• Coordinates
  • Lat. (^o): 47.76
  • Long. (^o): -127.76
  • Alt. (m): N/A
  • Depth (m): 454

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F008290	Metagenome	335	Y
F024529	Metagenome / Metatranscriptome	205	Y
F031707	Metagenome / Metatranscriptome	182	N
F056895	Metagenome / Metatranscriptome	137	Y
F062402	Metagenome	130	Y
F077253	Metagenome	117	Y
F087900	Metagenome	110	N
F093835	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0063354_1041454	Not Available	1079
Ga0063354_1052108	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	918
Ga0063354_1055640	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	879
Ga0063354_1059177	Not Available	842
Ga0063354_1069163	Not Available	755
Ga0063354_1079019	Not Available	690
Ga0063354_1085309	Not Available	655
Ga0063354_1101663	Not Available	584
Ga0063354_1121111	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0063354_1041454	Ga0063354_10414542	F077253	MGEHEFLREIANDKQTPRQMRKVNTDGLFETTDCSEPDHICTCGSEQVTLTED*
Ga0063354_1052108	Ga0063354_10521081	F024529	MFTSITSRQSFGATYQWAILSVLPMDDGDDGMTQDGMRPTDINAALGLPNEARTGLSMLLKVMAEQGLIKRHELGKRWVEYTRLVPLRNRERIARWVWQ*
Ga0063354_1055640	Ga0063354_10556402	F008290	MPEKIRMKIRRAGYVQRVGDKDYIKVRSRIESVPMRKLAKLNRLGGRTWRLVQEGRDIFLVLEALTLEEEKEALKKEKYPKL*
Ga0063354_1059177	Ga0063354_10591772	F062402	LAGSVAGLVASSLMIVCWFFRLRSALTEKGLKYTSKLGVLVWIMVLFMSVHVLLWKLGVIQKGGTFDSILMYTSATLNWIALVTVAVAMIFDAVKRRPTL*
Ga0063354_1069163	Ga0063354_10691634	F093835	KAFDDFMNHAETEIDSYKKRKEAEDYTNKFFERKAAELEVTVDYYMQEFL*
Ga0063354_1079019	Ga0063354_10790191	F031707	MAFLNWIQEATGCKVEDDRTGMIHTITGGKFLADSPMWPMIELTDETGVVRFATLDRFEEMISVG*
Ga0063354_1085309	Ga0063354_10853091	F056895	MEMELKQIPKPHKTTNPKHREDYVFVEKPGEDFTALKLISGPFSSIVYKYGAVGFRPESEKRPDGTLPMQFDYDIIENKIDADIDSQ
Ga0063354_1101663	Ga0063354_11016631	F087900	WHQYLQSFQEQVFVQQKINFYYCQVEDEDNHFPLAIARFTAYDQDHRPLSVEQVTYESDSNYFQRQVSAALSCGVDVSVITATPMEDFAWINQLSEHA*
Ga0063354_1121111	Ga0063354_11211112	F003647	RASNKAFAKVTMLKLDIDDYKRSLINGTYGGITYEEAEQVLEGYKTELKVWNYITELIEKQ*