NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055440_10211891

Scaffold Ga0055440_10211891


Overview

Basic Information
Taxon OID3300004020 Open in IMG/M
Scaffold IDGa0055440_10211891 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.04565Long. (o)-121.866287Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011852Metagenome / Metatranscriptome286Y
F082926Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0055440_102118911F011852GAGGMRMPLFSYFVVMGPTLALALIYVSDRIEPQGSPVPTSQIVGIAKPFKSEPERSPCTITGTNFAAAYKPVSARAAAEPKPIRRADSLPQQRPADNAETRNVPRWKTI
Ga0055440_102118912F082926N/AEASMPDISATEQSEQSNIVTWKATSIGTAIVLAVFLFLWL*

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