Scaffold Ga0063037_120218

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0063037_120218

Scaffold Ga0063037_120218

Overview

Basic Information
Taxon OID	3300003979 Open in IMG/M
Scaffold ID	Ga0063037_120218 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Max Planck Institute for Plant Breeding Research
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1071
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location Name	Mid-Atlantic Ridge
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049215	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063037_1202181	F049215	AGGA	VRWLLIACVAYLVSCTEPMKYVTRELTIWNKYVSNGYDNYDDEIEVNLKLGSQDWFWLYDSGDRVKIYNNSSFNWQFEFPEDFDSLYVHARFYYTKDLIIELVVADTAIRMDSDKTLMFWNCGDTTVVEYPFPACLTAVDSL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.