NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063037_106635

Scaffold Ga0063037_106635


Overview

Basic Information
Taxon OID3300003979 Open in IMG/M
Scaffold IDGa0063037_106635 Open in IMG/M
Source Dataset NameDiffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2907
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location NameMid-Atlantic Ridge
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015611Metagenome / Metatranscriptome253Y
F047304Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0063037_1066356F047304GAGGMEIKAQNWGAVITNNMVTEKELKKLKKRAGGFVKCPTRKAQGSKNARWGQCE*
Ga0063037_1066359F015611AGGMETTYTEFMEAKVKSWSDMKDRNVLKAAEKFKKKMRKDNVLGYTLAHQEFTIFRNEKEWNDSVKHGKDMKWIRVE*

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