NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063038_123889

Scaffold Ga0063038_123889


Overview

Basic Information
Taxon OID3300003978 Open in IMG/M
Scaffold IDGa0063038_123889 Open in IMG/M
Source Dataset NameDiffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)959
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location NameMid-Atlantic Ridge
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076483Metagenome118Y
F099435Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0063038_1238891F099435N/AMMIKDNSLKEIKNCEPKRQDALMYVVKNCSEYIVTPEGNEHWLCGSVIVTHWAHDTGYSRKYMGLAFPDNFESWSFHNDELAGEAFETHHEMENI*
Ga0063038_1238893F076483GGAGMQMISKNKLGQIFRTATFVDRITKIRTLQTLLNDTTLDIPLMRREVNQINMSWILRNILVNNDQHINISR

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