Scaffold Ga0063593_10008

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063593_10008

Scaffold Ga0063593_10008

Overview

Basic Information
Taxon OID	3300003964 Open in IMG/M
Scaffold ID	Ga0063593_10008 Open in IMG/M
Source Dataset Name	Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39864
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	500060
Total Scaffold Genes	539 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	435 (80.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.611214	Long. (^o)	163.119356	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089831	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063593_10008280	F089831	N/A	MTLDPFARLLFLEAAKGLNRKASARFARRQAYLGRPVPRSSTDRRPDPGTLNDGDPEMG*

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