NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0064068_110284

Scaffold Ga0064068_110284


Overview

Basic Information
Taxon OID3300003962 Open in IMG/M
Scaffold IDGa0064068_110284 Open in IMG/M
Source Dataset NameActivated sludge microbial communities from Ingolstadt, Germany, from a nitrification basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAalborg University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)789
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Communities From Ingolstadt, Germany, From A Nitrification Basin

Source Dataset Sampling Location
Location NameIngolstadt, Germany
CoordinatesLat. (o)48.7Long. (o)11.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024268Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0064068_1102841F024268GGAGGMAITELYSGTEAVGTTEHSCTTDTAGPDVDTTDGVFQVFLDVSDMIAGDQLQIRIYEKVRSADTQRIVYEAILTGPQIHPIWVSPSLVLMHGWDVTLDALAGTITVNWSIRQVT*

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