3300003962: Activated sludge microbial communities from Ingolstadt, Germany, from a nitrification basin

Overview

Basic Information

• IMG/M Taxon OID: 3300003962
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114042 | Gp0109961 | Ga0064068
• Sample Name: Activated sludge microbial communities from Ingolstadt, Germany, from a nitrification basin
• Sequencing Status: Permanent Draft
• Sequencing Center: Aalborg University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31388381
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Activated Sludge Microbial Communities From Ingolstadt, Germany, From A Nitrification Basin
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Communities From Ingolstadt, Germany, From A Nitrification Basin

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Ingolstadt, Germany
• Coordinates
  • Lat. (^o): 48.7
  • Long. (^o): 11.42
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004580	Metagenome / Metatranscriptome	432	Y
F008501	Metagenome	332	Y
F015419	Metagenome / Metatranscriptome	255	Y
F024268	Metagenome / Metatranscriptome	206	Y
F050362	Metagenome / Metatranscriptome	145	Y
F060838	Metagenome / Metatranscriptome	132	Y
F101036	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0064068_100022	Not Available	22709
Ga0064068_100296	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	114784
Ga0064068_101078	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17262
Ga0064068_104735	Not Available	1722
Ga0064068_104797	Not Available	7141
Ga0064068_108796	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	625
Ga0064068_110284	Not Available	789

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0064068_100022	Ga0064068_1000223	F004580	MIARFINGFISILIGVSLIGPISDQVNTASVTDGSLYNASSWGATVLKIVPGFFAIAILAIGIAVLYGNLRDAGMA*
Ga0064068_100296	Ga0064068_10029653	F050362	MGLLDKLTTQGGSPLSYGNGSTPSVNPGATQLSKLHTDGNQPGYSINGSNFTDVNTAFQQYNDGVNNVLPQPSQLDLNGATPTQYINNLPQ*
Ga0064068_101078	Ga0064068_10107817	F101036	MKINMKSKQLKRRMNSTAILSFYTSRELKGDNTRLSKATGYSESHISNVKSGRRSINDKIANAMYSISRRRIKQGIEA*
Ga0064068_104735	Ga0064068_1047354	F060838	MTTFQFVQPTEEQKATMQNFRDKYEALANEIKTLPASRGLSLAMTKLEESSFWLNKAITHNS*
Ga0064068_104797	Ga0064068_1047975	F008501	MEMQYKKSAVDLTDLALGIVVLGIVVSVGATILVNVRDTNDADTVSYNLADDAATGLAEYGNWFKIIVIVGVAAVILALIFLAFGRGAGSVGSTY*
Ga0064068_108796	Ga0064068_1087962	F015419	YNVNRSSSDEKKSLNDFILEAIQISEDKRKLPFMIQCPNDLEVYPSLKMKFENYGSPLLGDKLEAMHVTWRD*
Ga0064068_110284	Ga0064068_1102841	F024268	MAITELYSGTEAVGTTEHSCTTDTAGPDVDTTDGVFQVFLDVSDMIAGDQLQIRIYEKVRSADTQRIVYEAILTGPQIHPIWVSPSLVLMHGWDVTLDALAGTITVNWSIRQVT*