Scaffold Ga0064068_104735

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0064068_104735

Scaffold Ga0064068_104735

Overview

Basic Information
Taxon OID	3300003962 Open in IMG/M
Scaffold ID	Ga0064068_104735 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from Ingolstadt, Germany, from a nitrification basin
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Aalborg University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1722
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Communities From Ingolstadt, Germany, From A Nitrification Basin

Source Dataset Sampling Location
Location Name	Ingolstadt, Germany
Coordinates	Lat. (^o)	48.7	Long. (^o)	11.42	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060838	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0064068_1047354	F060838	N/A	MTTFQFVQPTEEQKATMQNFRDKYEALANEIKTLPASRGLSLAMTKLEESSFWLNKAITHNS*

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