Scaffold Ga0063391_1001157

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1001157
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24353
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (24.53%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043683	Metagenome	156	Y
F077939	Metagenome	117	Y
F077941	Metagenome	117	N
F099044	Metagenome	103	Y
F106107	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100115717	F043683	N/A	MDFTQEELNDIRAAVVLYMQNNISIRNPRYQEFEVILKKLNKTLQEK*
Ga0063391_10011572	F077939	AGG	MNIPMVSIPQVQLDQLIRDLQKAEGYCRRARPASRHPSREELFAEPTEFYSGASGFAGATLRNAIQTIESYL*
Ga0063391_100115720	F077941	GGA	MKDSRGLAELFMHFVRQLIIENEADNPQELYQLVADRSQAEANRLMALDPDRNK*
Ga0063391_100115724	F106107	N/A	MTLSVIEQTNFRNYIVHRLMLEIERLIPEYINTNQYLIEHIEDKGYESVEESYVQDASNITFTWPPDPFGRS*
Ga0063391_10011576	F099044	N/A	MQRIDVKVDERFAAVLKGYCAYWGLTLGELMYEAAKQHVHSSAQVCTLADDLMRKHGVIADKRSAKHCYGYLCRCCKHQLMCRTGLYQNEWEIADEHKHLQKDQSNDYPLDSYKQ*