Metagenome Family F077941

Overview

Basic Information

• Family ID: F077941
• Family Type: Metagenome
• Number of Sequences: 117
• Average Sequence Length: 53 residues
• Representative Sequence: MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
• Number of Associated Samples: 56
• Number of Associated Scaffolds: 117

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 52.99 %
• % of genes near scaffold ends (potentially truncated): 18.80 %
• % of genes from short scaffolds (< 2000 bps): 83.76 %
• Associated GOLD sequencing projects: 52
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (78.632 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (39.316 % of family members)
• Environment Ontology (ENVO): Unclassified (90.598 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (88.889 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 77.36%
  β-sheet: 0.00%
  Coil/Unstructured: 22.64%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00504	Chloroa_b-bind	10.26
PF00124	Photo_RC	2.56
PF01176	eIF-1a	1.71
PF03330	DPBB_1	0.85
PF02945	Endonuclease_7	0.85
PF01503	PRA-PH	0.85
PF07681	DoxX	0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	1.71
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.85
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.85

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
All Organisms	root	All Organisms	21.37 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Viruses	superkingdom	All Organisms → Viruses	15.38 %
cellular organisms	root	All Organisms → cellular organisms	5.98 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.98 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	3.42 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.11 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	3.42 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.11 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	3.42 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.85 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.11 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3.42 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.85 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.11 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	3.42 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.85 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.11 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.85 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.85 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001450|JGI24006J15134_10017350	All Organisms → cellular organisms → Bacteria	3375
3300001450|JGI24006J15134_10023289	All Organisms → cellular organisms → Bacteria	2812
3300001450|JGI24006J15134_10029466	All Organisms → cellular organisms → Bacteria	2426
3300001450|JGI24006J15134_10055543	All Organisms → Viruses → Predicted Viral	1592
3300001450|JGI24006J15134_10104342	Not Available	1011
3300001450|JGI24006J15134_10146061	Not Available	781
3300001450|JGI24006J15134_10151691	Not Available	759
3300001450|JGI24006J15134_10181359	Not Available	660
3300001450|JGI24006J15134_10237013	Not Available	532
3300001450|JGI24006J15134_10243296	Not Available	521
3300001450|JGI24006J15134_10254241	Not Available	503
3300001460|JGI24003J15210_10028596	Not Available	2048
3300003580|JGI26260J51721_1063612	Not Available	551
3300003937|Ga0063391_1001157	All Organisms → cellular organisms → Bacteria	24353
3300005239|Ga0073579_1014397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1946
3300005239|Ga0073579_1170095	Not Available	21580
3300005239|Ga0073579_1368635	Not Available	877
3300006752|Ga0098048_1166029	Not Available	656
3300006789|Ga0098054_1081906	Not Available	1216
3300006789|Ga0098054_1350130	Not Available	524
3300006793|Ga0098055_1067605	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1417
3300006793|Ga0098055_1142544	Not Available	924
3300006793|Ga0098055_1208694	Not Available	741
3300006793|Ga0098055_1279325	Not Available	626
3300006921|Ga0098060_1052582	All Organisms → Viruses → Predicted Viral	1203
3300006921|Ga0098060_1074830	Not Available	976
3300006921|Ga0098060_1099261	Not Available	825
3300006921|Ga0098060_1131736	Not Available	698
3300006921|Ga0098060_1160345	Not Available	622
3300006922|Ga0098045_1100016	Not Available	684
3300006990|Ga0098046_1063668	Not Available	845
3300007863|Ga0105744_1054440	Not Available	987
3300007864|Ga0105749_1050652	Not Available	838
3300007956|Ga0105741_1094802	Not Available	730
3300007956|Ga0105741_1128797	Not Available	620
3300007957|Ga0105742_1007777	All Organisms → Viruses → Predicted Viral	1065
3300007992|Ga0105748_10076517	Not Available	1318
3300007992|Ga0105748_10182347	Not Available	868
3300010149|Ga0098049_1053723	All Organisms → Viruses → Predicted Viral	1284
3300010153|Ga0098059_1419190	Not Available	505
3300017708|Ga0181369_1109843	Not Available	567
3300017710|Ga0181403_1011765	Not Available	1884
3300017724|Ga0181388_1027124	All Organisms → Viruses → Predicted Viral	1418
3300017724|Ga0181388_1163053	Not Available	528
3300017726|Ga0181381_1039037	Not Available	1055
3300017727|Ga0181401_1165440	Not Available	533
3300017728|Ga0181419_1006905	Not Available	3456
3300017728|Ga0181419_1009759	Not Available	2851
3300017728|Ga0181419_1142823	Not Available	576
3300017735|Ga0181431_1082891	Not Available	720
3300017740|Ga0181418_1085980	Not Available	766
3300017741|Ga0181421_1157098	Not Available	588
3300017742|Ga0181399_1032688	Not Available	1404
3300017744|Ga0181397_1028388	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1615
3300017744|Ga0181397_1065351	Not Available	986
3300017744|Ga0181397_1079413	Not Available	877
3300017751|Ga0187219_1147554	Not Available	679
3300017752|Ga0181400_1074060	All Organisms → Viruses → Predicted Viral	1024
3300017752|Ga0181400_1101264	Not Available	846
3300017755|Ga0181411_1041858	All Organisms → Viruses → Predicted Viral	1429
3300017757|Ga0181420_1081171	Not Available	1011
3300017757|Ga0181420_1179081	Not Available	623
3300017762|Ga0181422_1014263	Not Available	2637
3300017762|Ga0181422_1051733	Not Available	1317
3300017762|Ga0181422_1080777	Not Available	1026
3300017762|Ga0181422_1125911	Not Available	793
3300017764|Ga0181385_1025616	All Organisms → Viruses	1879
3300017764|Ga0181385_1260981	Not Available	518
3300017767|Ga0181406_1148772	Not Available	702
3300017767|Ga0181406_1153801	Not Available	689
3300017770|Ga0187217_1019887	Not Available	2409
3300017770|Ga0187217_1025000	All Organisms → Viruses → Predicted Viral	2130
3300017770|Ga0187217_1042008	Not Available	1605
3300017770|Ga0187217_1061481	All Organisms → Viruses → Predicted Viral	1299
3300017770|Ga0187217_1148585	Not Available	785
3300017772|Ga0181430_1201605	Not Available	568
3300017776|Ga0181394_1027566	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2004
3300017776|Ga0181394_1129621	Not Available	792
3300017781|Ga0181423_1206883	Not Available	742
3300017782|Ga0181380_1074575	All Organisms → Viruses → Predicted Viral	1192
3300017783|Ga0181379_1032434	Not Available	2066
3300017783|Ga0181379_1040052	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1827
3300017783|Ga0181379_1081762	All Organisms → Viruses → Predicted Viral	1199
3300017783|Ga0181379_1247019	Not Available	616
3300020452|Ga0211545_10065413	Not Available	1737
3300021347|Ga0213862_10263778	Not Available	609
(restricted) 3300024255|Ga0233438_10105405	Not Available	1278
(restricted) 3300024255|Ga0233438_10150388	All Organisms → Viruses → Predicted Viral	1000
(restricted) 3300024255|Ga0233438_10299197	Not Available	618
(restricted) 3300024255|Ga0233438_10337409	Not Available	566
(restricted) 3300024261|Ga0233439_10336118	Not Available	637
(restricted) 3300024518|Ga0255048_10584832	Not Available	540
3300025099|Ga0208669_1057374	Not Available	876
3300025099|Ga0208669_1078792	Not Available	710
3300025108|Ga0208793_1070338	All Organisms → Viruses → Predicted Viral	1030
3300025108|Ga0208793_1106369	Not Available	781
3300025120|Ga0209535_1004751	Not Available	8440
3300025168|Ga0209337_1009915	Not Available	6065
3300025168|Ga0209337_1033110	All Organisms → cellular organisms → Bacteria	2841
3300025168|Ga0209337_1056717	Not Available	2001
3300025168|Ga0209337_1089516	Not Available	1466
3300025168|Ga0209337_1094487	Not Available	1410
3300025168|Ga0209337_1101952	Not Available	1335
3300025168|Ga0209337_1131046	Not Available	1115
3300025168|Ga0209337_1157498	Not Available	975
3300025168|Ga0209337_1167040	Not Available	933
3300025168|Ga0209337_1180617	Not Available	880
3300025168|Ga0209337_1186360	Not Available	859
3300025168|Ga0209337_1289374	Not Available	601
(restricted) 3300027861|Ga0233415_10238708	Not Available	847
3300029448|Ga0183755_1050311	Not Available	1053
3300031766|Ga0315322_10234513	Not Available	1275
3300031851|Ga0315320_10684449	Not Available	661
3300032073|Ga0315315_10027336	Not Available	5293
3300032073|Ga0315315_10172103	All Organisms → cellular organisms → Bacteria	2022
3300032073|Ga0315315_10511795	Not Available	1112
3300032073|Ga0315315_11653547	Not Available	549

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	42.73%
Strait	Environmental → Aquatic → Marine → Strait	36.75%
Coastal	Environmental → Aquatic → Marine → Coastal	6.84%
Inlet	Environmental → Aquatic → Marine → Inlet	5.98%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.71%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	41.88%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	36.75%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.84%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	5.98%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.71%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.85%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	39.32%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	36.75%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	5.98%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	5.98%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	5.13%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.56%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.71%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.85%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.85%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.85%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental
3300003580	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA	Environmental
3300003937	SPOT_150m_metagenome_year	Environmental
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental
3300007863	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um	Environmental
3300007864	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0um	Environmental
3300007956	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um	Environmental
3300007957	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_3.0um	Environmental
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental
3300017710	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28	Environmental
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental
3300017741	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19	Environmental
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental
3300017751	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)	Environmental
3300017752	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22	Environmental
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental
3300017781	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14	Environmental
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental
3300021347	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266	Environmental
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental
3300024261 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG	Environmental
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental
3300025099	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)	Environmental
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental
3300027861 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG	Environmental
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental
3300031766	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515	Environmental
3300031851	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515	Environmental
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24006J15134_100173507	3300001450	Marine	MVTTKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNAMTALDPDRNK*
JGI24006J15134_100232896	3300001450	Marine	METVKLADLFMHFMEQLIIEHECKDTLRVYQLVADRCQAEVNRISANDPDRNR*
JGI24006J15134_100294667	3300001450	Marine	MKTTQLADLVLHFVEQMIIQHECDDPLRLYQLLADRYQAEVNRISANDPDRNR*
JGI24006J15134_100555435	3300001450	Marine	METVKLADLFMHFMAQLIIQHESKDPLRVYQLVADRCQAEVNRISANDPNRNR*
JGI24006J15134_101043421	3300001450	Marine	METVKLADLFMHFMTQLIIQHESKDPLRVYQLVADRCQAEVNRISANDPDRNR*
JGI24006J15134_101460611	3300001450	Marine	METVKLADLFMHFMEQLIIQHEAKDPLRVYQLIADRCQAKVNQLSADDPDRNR*
JGI24006J15134_101516912	3300001450	Marine	MDTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK*
JGI24006J15134_101813591	3300001450	Marine	TVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQSKVNAMTSIDPDRNK*
JGI24006J15134_102370131	3300001450	Marine	LKETVKLADLFMHFAEQLLIQHEAEDPLRVYQLXADRCQXQANRXAAVDPDRNR*
JGI24006J15134_102432961	3300001450	Marine	MTTAKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK*
JGI24006J15134_102542412	3300001450	Marine	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQSKVNAMTSLDPDRNK*
JGI24003J15210_100285964	3300001460	Marine	MSITTVRLTELFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTAIDPDRNK*
JGI26260J51721_10636122	3300003580	Marine	MTNTKELTGLFMHFLEQLMREHEADNPQEVYQLVADRCQAQANRLMALDPARNR*
Ga0063391_100115720	3300003937	Marine	MKDSRGLAELFMHFVRQLIIENEADNPQELYQLVADRSQAEANRLMALDPDRNK*
Ga0073579_10143976	3300005239	Marine	LKETVKLADLFMHFAEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNR*
Ga0073579_117009526	3300005239	Marine	MTTVKLADLFIHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK*
Ga0073579_13686353	3300005239	Marine	MKDSRALAELFMHFLRHLIIEHEADDPQELYQLVADRSQAEANRLMALDPDRNK*
Ga0098048_11660292	3300006752	Marine	LINTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNR*
Ga0098054_10819063	3300006789	Marine	LINTVKLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNK*
Ga0098054_13501301	3300006789	Marine	RGVSSRLINTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLSAEDPDRNR
Ga0098055_10676051	3300006793	Marine	LINTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLSAEDPDRNR*
Ga0098055_11425441	3300006793	Marine	MTSEKIADLFVFFLKQLMIEHEADDPLRVYQLVADKCQARVNQMTAVDPDRNK*
Ga0098055_12086941	3300006793	Marine	LINTVKLADLFMHFVEQLLIQHEAEDPLRVYQLIADRCQAQANRLAAEDPDRNK*
Ga0098055_12793252	3300006793	Marine	MTTVKLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPERNK*
Ga0098060_10525822	3300006921	Marine	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNSMTALDPDRNK*
Ga0098060_10748302	3300006921	Marine	YCRRLTHMTTKTLVDLFMHFLKQLLIQHEAEDPLQVYQLVADRSQAEANRLIALDPARNR
Ga0098060_10992612	3300006921	Marine	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANKLAAENPDRNK*
Ga0098060_11317362	3300006921	Marine	METVKLADLFMHFLEQLIIQHECKDTLRVYQLVADRCQAEVNRISANDPDRNR*
Ga0098060_11603452	3300006921	Marine	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANKLAAEDPDRNR*
Ga0098045_11000162	3300006922	Marine	VGSSLINTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNK*
Ga0098046_10636682	3300006990	Marine	LIDTAKLADLFMHFVEQLLIQHEAEDPLRVYQLIADRCQAQANRLAAEDPDRNR*
Ga0105744_10544402	3300007863	Estuary Water	METVKLADLFMHFMEQLIIQHECKDPLRVYQLVADRCQAEVNRISANDPDRNR*
Ga0105749_10506522	3300007864	Estuary Water	METVKLADLFMHFLEQLIIQHEAKDPLRVYQLVADRCQAEVNRISANDPDRNR*
Ga0105741_10948021	3300007956	Estuary Water	MHFMAQLIIQHEAKDPLRVYQLVADRCQAEVNRISANDPDRNR*
Ga0105741_11287973	3300007956	Estuary Water	MKNTSELTGLFMHFLVQLIREHEADNPQEVYQLVADRCQAQANRLMALDPARNR*
Ga0105742_10077772	3300007957	Estuary Water	MTTVKLADLIMHFVEQLLIQHEAEDPLRVYQLVADRCQAEVNRISANDPDRNR*
Ga0105748_100765172	3300007992	Estuary Water	MKNTSELTGLFMHFLLQLTREHEADNPQEVYQLVADRCQAQANRLMALDPARNR*
Ga0105748_101823472	3300007992	Estuary Water	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNQMTALDPDRNK*
Ga0098049_10537233	3300010149	Marine	LINTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNK*
Ga0098059_14191902	3300010153	Marine	MTNTRELTGLFMHFLVQLIREHEADNPQEVYQLVADRCQAEANRLIALDPARNR*
Ga0181369_11098432	3300017708	Marine	LMTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANKLAAENPDRNR
Ga0181403_10117655	3300017710	Seawater	LKETVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNR
Ga0181388_10271242	3300017724	Seawater	METVKLADLFMHFIEQLIIQHEAKDPLRVYQLVADRCQAEVNRISADDPDRNR
Ga0181388_11630532	3300017724	Seawater	LKETVKLADLFMHFAEQLLIQHEAEDPLRVYQLIADRCQAQANRLAAEDPDRNK
Ga0181381_10390372	3300017726	Seawater	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQVNRMTALDPDRNK
Ga0181401_11654403	3300017727	Seawater	MTSEKIADLFVFFLKQLMIEHEADDPLRVYQLVADKCQARVNQMTAVDPDRNPLPL
Ga0181419_100690511	3300017728	Seawater	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
Ga0181419_10097596	3300017728	Seawater	METVKLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNR
Ga0181419_11428232	3300017728	Seawater	LIDTVKLADLFMHFLEQLLIQHEAKDPLRVYQLVADRCQAQANRLAAEDPDRNK
Ga0181431_10828911	3300017735	Seawater	MTTVKLADLFMHFAKQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPD
Ga0181418_10859803	3300017740	Seawater	METVKLADLFMHFMEQLVIQHECKDPLRVYQLVADRCQAEVNRISANDPDRNR
Ga0181421_11570981	3300017741	Seawater	TVKLADLFMHFMEQLIIQHECKDPLRVYQLVADRCQAEVNRISANDPDRNR
Ga0181399_10326883	3300017742	Seawater	LIDTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAADPDRNR
Ga0181397_10283886	3300017744	Seawater	LKETVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNK
Ga0181397_10653514	3300017744	Seawater	MTTVKLADLFMHFVEQLLIQHEAKDPLRVYQLVADRCQAQVNRMTALDPDRNK
Ga0181397_10794132	3300017744	Seawater	MNTVKLADLFMHFVEQLLIQHEAEDPLRVYQLIADRCQAQVNRMTALDPDRNK
Ga0187219_11475542	3300017751	Seawater	MHFLKQLLIEHEAEDPLRVYQLVADRCQAQVNQMTALDPDRNK
Ga0181400_10740602	3300017752	Seawater	FVFFLKQLMIEHEADDPLRVYQLVADKCQTKVNQMTAVDPDRNK
Ga0181400_11012642	3300017752	Seawater	METVKLADLFMHFMKQLIIQHESKDPLRVYQLVADRCQAEVNRISADDPDRNR
Ga0181411_10418582	3300017755	Seawater	LIDTVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNR
Ga0181420_10811712	3300017757	Seawater	MDTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
Ga0181420_11790812	3300017757	Seawater	METVKLADLFMHFAEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAKDPDRNK
Ga0181422_10142632	3300017762	Seawater	METVKLADLFMHFLEQLLIQHEAEHPLRVYQLVADRCQAQANRLAAEDPDRNR
Ga0181422_10517332	3300017762	Seawater	MTSEKIADLFVFFLKQLMIEHEADDPLRVYQLVADKCQARVNQMTAVDPDRNK
Ga0181422_10807771	3300017762	Seawater	LADLFMHFLEQLLIQHEAEHPLRVYQLVADRCQAQANRLAAEDPDRNR
Ga0181422_11259111	3300017762	Seawater	MKTVELADLFMHFIKQLLIEHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
Ga0181385_10256161	3300017764	Seawater	LIDTVKLADLFMHFVKQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNR
Ga0181385_12609811	3300017764	Seawater	MPCSCQASRAQRGASSSLIDTVKLADLFMHFLEQLLIQHEAEDPLRVYQLIADRCQAQANRLAAEDPDRNK
Ga0181406_11487722	3300017767	Seawater	FMHFMEQLIIQHECKDPLRVYQLVADRCQAEVNRISANDPDRNR
Ga0181406_11538011	3300017767	Seawater	LKETVKLADLFMHFVEQLLIQHEAEDPLRVYQLIADRCQAQANRLAAVDPDRNR
Ga0187217_10198879	3300017770	Seawater	MNTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
Ga0187217_10250005	3300017770	Seawater	MTTVKLADLFMHFLKQLLIEHEAEDPLRVYQLVADRCQAQVNQMTALDPDRNK
Ga0187217_10420082	3300017770	Seawater	MNTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNQMTALDPDRNK
Ga0187217_10614814	3300017770	Seawater	METVKLADLFMHFLEQLIIQHEAKDPLRVYQLVADRCQAEVNRISANDPDRNR
Ga0187217_11485851	3300017770	Seawater	MTTVRLADLFMHFVKQLLIEHEADDPLRVYQLLADRCQAQANQLAASDPNRNK
Ga0181430_12016053	3300017772	Seawater	MDTVKLADLFMHFVEQLLIQHEAKDPLRVYQLVADRCQAQVNRMTAL
Ga0181394_10275668	3300017776	Seawater	MPCSCQASRAQRGASSSLIDTVKLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNK
Ga0181394_11296211	3300017776	Seawater	SLIDTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
Ga0181423_12068832	3300017781	Seawater	MKTVELADLFMHFIKQLLIEHEAKDPLRVYQLVADRCQAQVNRMTALDPDRNK
Ga0181380_10745754	3300017782	Seawater	LRGSRGASCSLKETVKLADLFMHFAEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNR
Ga0181379_10324342	3300017783	Seawater	MSITTVRLTELFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALVPDRNK
Ga0181379_10400522	3300017783	Seawater	LKETVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDHNR
Ga0181379_10817626	3300017783	Seawater	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNAMTAIDPDRNK
Ga0181379_12470193	3300017783	Seawater	LIETVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNR
Ga0211545_100654132	3300020452	Marine	MSITTVRLTELFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
Ga0213862_102637782	3300021347	Seawater	MTTVKLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
(restricted) Ga0233438_101054054	3300024255	Seawater	LINTVKLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNK
(restricted) Ga0233438_101503883	3300024255	Seawater	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTTLDPDRNK
(restricted) Ga0233438_102991972	3300024255	Seawater	MTTVKLADLFMHFLRQLLIEHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK
(restricted) Ga0233438_103374091	3300024255	Seawater	CSLIDTLKLADLFIHFLEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNR
(restricted) Ga0233439_103361182	3300024261	Seawater	KLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNR
(restricted) Ga0255048_105848322	3300024518	Seawater	LIDTVKLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNR
Ga0208669_10573743	3300025099	Marine	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNSMTALDPDRNK
Ga0208669_10787923	3300025099	Marine	METVKLADLFMHFMEQLIIQHEAEDPLRVYQLVADRCQAKVNQISADDPDRNR
Ga0208793_10703382	3300025108	Marine	MTSEKIADLFVFFLKQLMIEHEADDPLRVYQLVADKCQAKVNQMTAVDPDRNK
Ga0208793_11063692	3300025108	Marine	LINTVKLADLFMHFVEQLLIQHEAEDPLRVYQLIADRCQAQANRLAAVDPDRNK
Ga0209535_10047517	3300025120	Marine	MSITTVRLTELFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTAIDPDRNK
Ga0209337_100991516	3300025168	Marine	MKNTKELTGLFMHFLVQLIREHEADNPQQVYQLVADRCQAEANRLMALDPARNR
Ga0209337_10331104	3300025168	Marine	METVKLADLFMHFMEQLIIEHECKDTLRVYQLVADRCQAEVNRISANDPDRNR
Ga0209337_10567173	3300025168	Marine	METVKLADLFMHFMEQLIIQHEAKDPLRVYQLIADRCQAKVNQLSADDPDRNR
Ga0209337_10895163	3300025168	Marine	MTTVKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNQMTALDPDRNK
Ga0209337_10944874	3300025168	Marine	LKETVKLADLFMHFAEQLLIQHEAEDPLRVYQLLADRCQAQVNRLAAVDPDRNR
Ga0209337_11019521	3300025168	Marine	MTTTKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNQMTALDPDRNK
Ga0209337_11310462	3300025168	Marine	MKTTQLADLVLHFVEQMIIQHECDDPLRLYQLLADRYQAEVNRISANDPDRNR
Ga0209337_11574982	3300025168	Marine	LKETVKLADLFMHFAEQLLIQHEAEDPLHVYQLLADRCQAQANRLAAVDPDRNR
Ga0209337_11670403	3300025168	Marine	METVKLADLFMHFMTQLIIQHESKDPLRVYQLVADRCQAEVNRISANDPDRNR
Ga0209337_11806172	3300025168	Marine	TGSSLMETVKLADLFMHFMKQLIVQHECEHPLRLYQLVADRCQAEVNRISANDPDRNR
Ga0209337_11863601	3300025168	Marine	MVTTKLADLFMHFVEQLLIQHEAEDPLRVYQLVADRCQAKVNAMTALDPDRNK
Ga0209337_12893743	3300025168	Marine	MNTVKLADLFMHFVEQLLIQHEAEDPLLVYQLVADRCQAQVNRMTALDPDRNK
(restricted) Ga0233415_102387081	3300027861	Seawater	SRAQRGASSSLIDTVKLADLFMHFLEQLLIQHEAEDPLRVYQLVADRCQAQANRLAAEDPDRNR
Ga0183755_10503113	3300029448	Marine	MSITTVRLAELFMHLLEQLLIQHEAEDPLRVYQLCADRCQAQANRLANLDPDRNK
Ga0315322_102345133	3300031766	Seawater	MTNTRELTGLFMHFLVQLIQEHEADNPQEVYQLVADRCQAQANRLMALDPARNR
Ga0315320_106844492	3300031851	Seawater	LKETVKLADLFMHFVEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNR
Ga0315315_1002733611	3300032073	Seawater	MKDSRGLAELFMHFVRQLIIENEADNPQELYQLVADRSQAEANRLMALDPDRNK
Ga0315315_101721032	3300032073	Seawater	METVKLADLFMHFMKQLIIEHECKDTLRVYQLVADRCQAEVNRISANDPDRNR
Ga0315315_105117952	3300032073	Seawater	LKDTVKLADLFMHFAEQLLIQHEAEDPLRVYQLLADRCQAQANRLAAEDPDRNR
Ga0315315_116535472	3300032073	Seawater	METVKLADLFMHFMAQLIIQHEAEDPLRVYQLVADRCQAEVNRISA