Scaffold Ga0063241_1020757

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1020757
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3518
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042289	Metagenome / Metatranscriptome	158	N
F074770	Metagenome	119	Y
F084122	Metagenome / Metatranscriptome	112	Y
F105002	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_102075710	F105002	AGG	MEYFNKWYAVMQWDAMANEYVELVKRPHKHLCYEYINKSNLRNAKVVAYYW*
Ga0063241_10207573	F042289	GAGG	MIDGIFRIEEVRADECPDEFLTRVGNANVTMWRDRLADHDGKIYFSFPYISWCDAMYVDADEPMAILVEETWEEAALDIEFDLMKKGMI*
Ga0063241_10207574	F084122	AGGCGG	MFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVTV*
Ga0063241_10207578	F074770	AGGA	MNADPTGFEDAWADIYWTFAHDDMAFDYRASYYKERYLKVKAGIIDFEAMALERG*