Scaffold Ga0031658_1001238

Overview

Basic Information

• Taxon OID: 3300003860
• Scaffold ID: Ga0031658_1001238
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4605
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033329	Metagenome	177	N
F065376	Metagenome	127	Y
F085061	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031658_10012382	F065376	N/A	MNAANIDNISEFYKALNSTEVLRAQSMIEGAPQIIEDKLSYDMSAESIKAANDAIKHIETNRKMVTLPLDTYKKSVMDVEKDATAPLKAYIEQRKQMMIDYSNELAVKKAVADAKIAQEAADALMSASTSDMSTIMAKFTDATTTTTLEMDHTKNIRISKKAEIVGEVDWMTLLWTLMQAEMFDVAELLRKLPKAMEITKIAEIRGIELTEVKTQVIR*
Ga0031658_10012384	F085061	N/A	MNELNNIGAEFANFNRYLDAIIDPRECDNDTPYAKVKEAIIQAYSNGYHDGQQSMYKRLPKPHDIGGDEGGREYYDSL*
Ga0031658_10012388	F033329	N/A	MSRDIYNSIEAINASSIKRHYTGSIQYAAGALERGAEFHRNLLETEPKYMPPNARLIYDAIMKHPMLRLVFEKSAKEITFIKEIDIDGRKVAAKGILDLHCPMYYINADIKTTSCTTLRAFASDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIHRHTADEIDTAENLIREYLVHRGL*