Scaffold Ga0055582_1025337

Overview

Basic Information

• Taxon OID: 3300003847
• Scaffold ID: Ga0055582_1025337
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1039
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 53.9944
  • Long. (^o): 6.8905
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067130	Metagenome / Metatranscriptome	126	N
F080236	Metagenome / Metatranscriptome	115	N
F085730	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055582_10253371	F080236	AGGA	MNNIYDKKFEIYLVQKGYDLNCISLNECLKEIKLWKKNTENV*
Ga0055582_10253372	F067130	N/A	MQIEIDTVDLQNTLEQLYDRKVKLVAYASADGLDTLVLEGHEEDLFNFYLESFNPFNEWTNTDVVRSEFFAHILTK*
Ga0055582_10253373	F085730	N/A	MNYKEENWYNDIIDRLKDHEGMDQDDFYDVLHQEIDNMVIYNSESQRIVDDLNYDVFQEHDVFGRADNIGQAAYAALYDLFEEGDFTYEDYNNKPITQ*