NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007856_1000016

Scaffold Ga0007856_1000016


Overview

Basic Information
Taxon OID3300003815 Open in IMG/M
Scaffold IDGa0007856_1000016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17568
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (31.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038058Metagenome166Y
F055388Metagenome / Metatranscriptome138N
F080806Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0007856_100001615F080806N/AMVHHLDTAATGAIGFAAPIAAATLSLDATLDLEMRIASMAVGILVGLASFAKLCYDIWADHKNREK*
Ga0007856_100001621F055388N/AMAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQQVQSGRCIQNADDVQFETIAHPGTESYTFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVAEDDQMFIVQPFEGTNEGSYNMGYVYVKLPASQLTNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEVIVPDSRVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWTYNASLLTFNANDPSTWPRLVRVLPYVPVATELGCKYVQNPAYNNADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNTSKLIIPAPCTLSASYVPQYTPDCYVCSSVVNQPI*
Ga0007856_10000166F038058N/AMLASSNLNPPPRVAVPPRNNMASHGVQYTRDNTERGIVFDHAMPQPMQRVQIKGDIPTIRAYKDARTARIKAIGEANQKAVSVGSANESGMGANANPFHADWI*
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