Scaffold Ga0007842_1003522

Overview

Basic Information

• Taxon OID: 3300003798
• Scaffold ID: Ga0007842_1003522
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1204
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032114	Metagenome / Metatranscriptome	180	N
F062234	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007842_10035222	F062234	AGGA	MRQWIVRHERDGDNVVALWENEDGDRWYVQVVINGEVQW*
Ga0007842_10035223	F032114	GGAG	MIHFLGGMQSVTTIYLVWSRYKTASMPDWDWVNDLPDGVSQVAHWVIKRIPK*