Scaffold Ga0007835_1004064

Overview

Basic Information

• Taxon OID: 3300003789
• Scaffold ID: Ga0007835_1004064
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F017785	Metagenome	238	Y
F068572	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007835_10040642	F017785	AGGCGG	MNDIPPLDNTNNIRYADFVRVISPSGTYRFATTASALTINAVDSQPFDGLGSLISIGDIQRDIKSTANQTSVSLVGIDTALLSWVLSQDIKGSQITMWKGFFDTSGNLITTGGSGGLYQYFYGFINTYQISEQWMEEVRSYIGTISIQASNIQMILQNRTAGRFTNDPSWQYFNSGDTSMNRVSTIATLYFQFGSQVA*
Ga0007835_10040643	F000934	AGTAGG	MANLNTILAIAETVHITDQRFVGQVISRNQRISTSELITVVPFMFEFKPNNYLLYSKNRALLANLRYYDKSLTQYLNFGTTGWTNYINYQGDMTSAEIAACQWETASTAKNMVLGNLPAISASAYIVRAGDFCQVGTYTYIATQDVQRGXGSTVTIPVHRNLINGPLGSAVNAVIGQYGTTVSMGGTNYTGVTFPVILQQYPTYTLMPITNDSFISWQSTFKAFEAVT*
Ga0007835_10040644	F068572	N/A	GQSVTYNGPYIASMQAIDTQSATTFLARNKTAVWAANQSAQRSLPQSR*