Scaffold Ga0007811_1000137

Overview

Basic Information

• Taxon OID: 3300003787
• Scaffold ID: Ga0007811_1000137
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10915
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038050	Metagenome	166	Y
F041723	Metagenome	159	Y
F050095	Metagenome	145	N
F068451	Metagenome	124	N
F078713	Metagenome	116	Y
F082373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007811_100013715	F068451	GGAG	MTVAIKTTLKIVDQLGLIQDQIDQLTEQAEALKDQIKLLGAGTYAGTMYVTTIKHTPEKKSTSWASVAKELNAPADLVAKHTKITKDILSAETKPLSN*
Ga0007811_100013718	F041723	GAGG	MKEISDLQKQILGNAGHVKFFTQQEFDEAMAIAQAEIMTVAIETTKRAIFIERQACSDLVKELAAAEDEGETCTALKNAAEAILNRIPSQRQ*
Ga0007811_100013719	F038050	AGG	MKRYFSIIGYCMTPFIVSYAFWYVIGAGISASWDLANWTTGLKVTLTVWACVFAIMLLFKLEHEK*
Ga0007811_100013721	F050095	AGCAGG	MMDWIDIVVGGIVAIFIVGGCLALYADAVNHPWGEDDDH*
Ga0007811_100013725	F078713	AGGAG	MSAKPIPAKEVAASIMKIMDEVAQEYPEEEREELKAVMLGQLGMALFNGPSEEKNT*
Ga0007811_10001373	F082373	GGA	MNYEAWIAEKVNSGKEATISLALLEKLIYEPAIKHWIESTAKKLGCKATIHWKSDVVTFYPVSAK*