Scaffold Ga0007811_1000002

Overview

Basic Information

• Taxon OID: 3300003787
• Scaffold ID: Ga0007811_1000002
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57523
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012096	Metagenome	283	Y
F037052	Metagenome	168	Y
F048010	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007811_100000231	F048010	AGGA	MEKELGFKKAYKMTGTPGYAGGPDQKVESGPSGSHRDNNWKKGAAQVKLKGTNKVGPDKNLNDIGGGNFY*
Ga0007811_100000276	F037052	GGA	MTVSKYDPKMLETMIEMGRQGASQKMIWSELGISKSTADAWRKKYPDFADALDLALVHSQAYWERLMLANAENKNFNTRMVEVAVRGQFQQDYRERMDIKQDINQKVEVDFNAAVTDLIAQLKKAGEE*
Ga0007811_100000278	F012096	GGAGG	MSSWLVGLMGLVYLAVAVEQFMKGGYGQGIMFTGYAIGNAGILLVVK*