Scaffold Ga0007850_1000082

Overview

Basic Information

• Taxon OID: 3300003783
• Scaffold ID: Ga0007850_1000082
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9513
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020485	Metagenome	223	Y
F035995	Metagenome	171	Y
F091214	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007850_100008212	F035995	GAGG	MSVVTPEQVERRLKELSKLIDEAHDQLVDSEANYHRNKAEYELAMAKSRIGLASKSSPTGKNYTVGEREDMALIENGDLHKQTATDEAIVKANRANVARLRVQVDIARSIGTSVRTGMDVA*
Ga0007850_100008215	F020485	GGA	MKIICTTKQHWKIKDGKLILGAKDDEFLAQQLTKMTVRIEAEIRLDIYEKICAIDFVNDRKTIVKSGIENVALQVQDICARIALGELK*
Ga0007850_100008220	F091214	GAG	MAGLMRKPWVKPKELTLEDLAWLMFEKTTFLEAQEFAYDLGYEIVIRWKE*