Scaffold PicViral_1007498

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1007498
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3865
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077177	Metagenome	117	N
F091871	Metagenome	107	N
F103080	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10074982	F103080	AGG	VGAGSGQTPLRNQARVPELDVWNEVIRRALRDLCEPADSLRDEAIEWIGDGKGEDFVTVCSAADLEPSAVAKLAHRILALGPDRGKVYLTQVLEVTEGDRDKRATD*
PicViral_10074985	F077177	AGGA	MAKNPQLGGGAMFRNQRKVEKLTLAADYIPDSNQNAPELSGDVGFTKAAVQMLVAQFKEHKTEVSPVTNQHEAKLEIAARIKIQKDGATPYLSLWFTPPYEKPPEPKAEPVSNDLDDDIPF*
PicViral_10074988	F091871	AGGAGG	MAGAKGRPRRMDTEHSTYNVLLPETTITAIKSEAENSGVSSAQVVRDVLADGLGGEKKKGGTIQSWCDAIKLAIQTVRDAYPVPRFADGKTLGDQIAGKIEAALERRETKGPDD*