Metagenome Family F103080

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103080
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	96 residues
Representative Sequence	VSELTVWNEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTEGDRHNRTIDQ
Number of Associated Samples	60
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	64.36 %
% of genes near scaffold ends (potentially truncated)	34.65 %
% of genes from short scaffolds (< 2000 bps)	82.18 %
Associated GOLD sequencing projects	45
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (79.208 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (78.218 % of family members)
Environment Ontology (ENVO)	Unclassified (99.010 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (93.069 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136 1JGI24521J20086_10190652 2JGI24514J20073_10218292 3JGI25129J35166_10633931 4JGI25131J35506_10198112 5JGI25131J35506_10475802 6JGI25133J35611_101705901 7JGI25133J35611_101756452 8JGI25134J35505_100334572 9JGI25130J35507_10179852 10JGI25130J35507_10369972 11JGI25130J35507_10858941 12JGI25136J39404_10073472 13JGI25136J39404_10137751 14JGI25136J39404_10699271 15PicViral_100054315 16PicViral_100130917 17PicViral_10074982 18Ga0098033_10222103 19Ga0098033_10438522 20Ga0098033_10535472 21Ga0098035_11223612 22Ga0098058_10412952 23Ga0098058_10783482 24Ga0098040_10125881 25Ga0098040_10874862 26Ga0098048_11535952 27Ga0098039_11693232 28Ga0098039_11905832 29Ga0098039_12597131 30Ga0098054_11480642 31Ga0098055_12403441 32Ga0098051_11926162 33Ga0098050_11356741 34Ga0098034_10455852 35Ga0098036_10265432 36Ga0114899_10613613 37Ga0114905_10287392 38Ga0114905_11811242 39Ga0114905_12871592 40Ga0114902_10219681 41Ga0114908_11059622 42Ga0114911_10614661 43Ga0114912_10643081 44Ga0114912_11449021 45Ga0098047_101394862 46Ga0098047_101741251 47Ga0098047_103569061 48Ga0181367_10223092 49Ga0181367_10458292 50Ga0181371_10060782 51Ga0181371_10680451 52Ga0181372_10068433 53Ga0181372_10284142 54Ga0181372_10912971 55Ga0181370_10041423 56Ga0181375_10148012 57Ga0226832_100052927 58Ga0187833_103905932 59Ga0207901_10034712 60Ga0207902_10001474 61Ga0207898_10095442 62Ga0207906_10071601 63Ga0207906_10343261 64Ga0208012_10102482 65Ga0207887_10184841 66Ga0207887_10680331 67Ga0208920_10449742 68Ga0208668_10429872 69Ga0208156_10063922 70Ga0208011_10473872 71Ga0209349_10123671 72Ga0209349_10554962 73Ga0209349_11201372 74Ga0208433_10188861 75Ga0208790_10526012 76Ga0209434_10115006 77Ga0209434_10798693 78Ga0209434_11766822 79Ga0209644_10020962 80Ga0209644_11252032 81Ga0209644_11620681 82Ga0208919_100180718 83Ga0209128_10670712 84Ga0209756_10600802 85Ga0207894_10264093 86Ga0208449_10500022 87Ga0208030_10315191 88Ga0208684_10715532 89Ga0208684_11601802 90Ga0209757_100103832 91Ga0209757_100242291 92Ga0209757_100260093 93Ga0209757_100396062 94Ga0209757_101808001 95Ga0209757_102063802 96Ga0209757_102208102 97Ga0209757_102576512 98Ga0209757_103045342 99Ga0310345_100314672 100Ga0310345_116097121 101Ga0326756_016905_19_267
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136 1JGI24521J20086_10190652 2JGI24514J20073_10218292 3JGI25131J35506_10198112 4JGI25136J39404_10699271 5Ga0098039_11905832 6Ga0098036_10265432 7Ga0114905_11811242 8Ga0181371_10680451 9Ga0209644_11620681
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92 1JGI25130J35507_10179852 2JGI24521J20086_10190652 3JGI25133J35611_101705901 4PicViral_10074982 5Ga0098033_10535472 6Ga0098040_10874862 7Ga0114905_12871592 8Ga0114908_11059622 9Ga0181367_10223092 10Ga0181367_10458292 11Ga0181371_10060782 12Ga0207898_10095442 13Ga0209349_10123671 14Ga0208919_100180718 15Ga0209757_100260093 16Ga0209757_102063802 17Ga0209757_102208102 18Ga0310345_100314672
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.83% β-sheet: 0.00% Coil/Unstructured: 39.17%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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SCOP family	SCOP domain	Representative PDB	TM-score
f.36.1.1: Neurotransmitter-gated ion-channel transmembrane pore	d1oeda_	1oed	0.63103
a.121.1.1: Tetracyclin repressor-like, C-terminal domain	d2hyja2	2hyj	0.60761
f.36.1.1: Neurotransmitter-gated ion-channel transmembrane pore	d1oedc_	1oed	0.60508
a.24.9.1: alpha-catenin/vinculin	d1dova_	1dov	0.60101
a.128.1.0: automated matches	d2q58a_	2q58	0.59706

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13662	Toprim_4	14.85
PF05866	RusA	5.94
PF12705	PDDEXK_1	5.94
PF06378	DUF1071	3.96
PF04404	ERF	2.97
PF00959	Phage_lysozyme	0.99
PF13203	DUF2201_N	0.99

Showing 1 to 7 of 7 entries

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COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	5.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	20.79 %
Unclassified	root	N/A	79.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	18.81 %
Unclassified	root	N/A	79.21 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	18.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	79.21 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Unclassified	root	N/A	79.21 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	79.21 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %
Unclassified	root	N/A	79.21 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Unclassified	root	N/A	79.21 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001728\|JGI24521J20086_1019065	Not Available	528	Open in IMG/M
3300001731\|JGI24514J20073_1021829	Not Available	570	Open in IMG/M
3300002484\|JGI25129J35166_1063393	Not Available	689	Open in IMG/M
3300002511\|JGI25131J35506_1019811	Not Available	925	Open in IMG/M
3300002511\|JGI25131J35506_1047580	Not Available	594	Open in IMG/M
3300002514\|JGI25133J35611_10170590	Not Available	586	Open in IMG/M
3300002514\|JGI25133J35611_10175645	Not Available	574	Open in IMG/M
3300002518\|JGI25134J35505_10033457	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300002519\|JGI25130J35507_1017985	Not Available	1667	Open in IMG/M
3300002519\|JGI25130J35507_1036997	Not Available	1021	Open in IMG/M

Showing 1 to 10 of 101 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	3.96%
Oceanic	Environmental → Aquatic → Marine → Oceanic	95.05%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Black Smokers	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers	2.97%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.99%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	95.05%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	13.86%
Filtered Seawater	Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater	0.99%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	0.99%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	78.22%
Marine, Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume	2.97%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.97%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001728	Marine viral communities from the Pacific Ocean - LP-46	Environmental	Open in IMG/M
3300001731	Marine viral communities from the Pacific Ocean - LP-37	Environmental	Open in IMG/M
3300002484	Marine viral communities from the Pacific Ocean - ETNP_2_130	Environmental	Open in IMG/M
3300002511	Marine viral communities from the Pacific Ocean - ETNP_2_1000	Environmental	Open in IMG/M
3300002514	Marine viral communities from the Pacific Ocean - ETNP_6_85	Environmental	Open in IMG/M
3300002518	Marine viral communities from the Pacific Ocean - ETNP_6_100	Environmental	Open in IMG/M
3300002519	Marine viral communities from the Pacific Ocean - ETNP_2_300	Environmental	Open in IMG/M
3300002760	Marine viral communities from the Pacific Ocean - ETNP_6_1000	Environmental	Open in IMG/M
3300003690	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 60 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24521J20086_10190652	3300001728	Marine	GVIRRALRDLCESDQSLRDEAVEWIGDGEGDNFLAACSDADLEPSAVAKLARRILALGPDRGKLYLTAVMEVTDNERDNRATD*
JGI24514J20073_10218292	3300001731	Marine	GNQASVSELGIWREVIRRALRDLCEPDASLRDEAVEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDSDRHNRATD*
JGI25129J35166_10633931	3300002484	Marine	VSELTVWSEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSXADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDDDRHNRTIDQ*
JGI25131J35506_10198112	3300002511	Marine	LGAGQGEPPLGNQXRVSELTVWXEVIRRALRXLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVAKLAHRLLALGPDRGKVYLTRVMEVTKGDRDNRTID*
JGI25131J35506_10475802	3300002511	Marine	GEPSLGNQARVSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFVAVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTQVMEVTTGDRDQRTID*
JGI25133J35611_101705901	3300002514	Marine	MGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRNEAVEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMLALGPDRAKVYLTQVIEVTDRDRHNRTIDQ*
JGI25133J35611_101756452	3300002514	Marine	VSELTVWSEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSNADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDDDRHNRTIDQ*
JGI25134J35505_100334572	3300002518	Marine	MGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAVEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMLALGPDRAKVYLTQVMEVTDRDRHNRTIDQ*
JGI25130J35507_10179852	3300002519	Marine	VSELTVWNEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTEGDRHNRTIDQ*
JGI25130J35507_10369972	3300002519	Marine	MGAGQGEPALGNQASVSELGIWREVIRRALRDLCEPDASLRDEAVEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTRVMEVTDRDRHNRTIDQ*
JGI25130J35507_10858941	3300002519	Marine	VGARQGXPPLGNQTRVSELTVWSEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPDRAKMYLTRVMEVTKGDRDNRTID*
JGI25136J39404_10073472	3300002760	Marine	VSELTVWNEVIRRALRDLCEPNASLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDSDRHNRTIDQ*
JGI25136J39404_10137751	3300002760	Marine	MGIGPGEPSLGNQARVSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFVAVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTQVMEVTTGDR
JGI25136J39404_10699271	3300002760	Marine	VPELDVWNEVIRRALRDLCEPDDSLRDEAIEWIGDGKGEDFLTVCSAADLEPSAVTKLAHRILALGPDRGKVYLTQVMEVTEGD
PicViral_100054315	3300003690	Marine, Hydrothermal Vent Plume	VGTRPGEPALGNKARVSELGIWREVIRRALRDLCEPDASLRDEAVEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRAKVYLTEVMEVTDRDGHNRTID*
PicViral_100130917	3300003690	Marine, Hydrothermal Vent Plume	VIRRALRDLCESDDSPRDEAIAWVGDGKGEDFTAVCSAADLEPSAVAKLAHRILALGPDRGKVYLTEVMEVTEGDRDNRTSD*
PicViral_10074982	3300003690	Marine, Hydrothermal Vent Plume	VGAGSGQTPLRNQARVPELDVWNEVIRRALRDLCEPADSLRDEAIEWIGDGKGEDFVTVCSAADLEPSAVAKLAHRILALGPDRGKVYLTQVLEVTEGDRDKRATD*
Ga0098033_10222103	3300006736	Marine	VGAGPGEPPLGNQTRVSELTVWNEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTRVMEVTDRDRHNRTIDQ*
Ga0098033_10438522	3300006736	Marine	MGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDRDRHNRTIDQ*
Ga0098033_10535472	3300006736	Marine	VGARQGEPPLGNQTRVSELTVWSEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFVAVCSAADLEPSAVAKLAHRLLALGPDRAKMYLTRVMEVTKGDSDNRTID*
Ga0098035_11223612	3300006738	Marine	VGAGPGEPPLGNQASVSELTVWNEVIRRALRDLCEPDESLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMLALGPDRGKVYLTKVMEVTTGDRDQRTID*
Ga0098058_10412952	3300006750	Marine	GARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDRDRHNRTIDQ*
Ga0098058_10783482	3300006750	Marine	VGAGPGEPALGNQTRVSELAVWNEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTRVMEVTDRDRHNRTIDQ*
Ga0098040_10125881	3300006751	Marine	LGVWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTKVMEVTTGDRDQRTID*
Ga0098040_10874862	3300006751	Marine	LGVWREVIRRALRDLCESEASLRDEAIEWIGDGNGEDFLAVCSDADLEPSAVAKLAHRLLALGPNRGKVYLTEVMEVTDRDRHNRTIDQ*
Ga0098048_11535952	3300006752	Marine	VGAGPGEPPLGNQASVSELTVWNEVIRRALRDLCEPDESLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHLMLALGPDRGKVYLTKVMEVTTGDRDQRTID*
Ga0098039_11693232	3300006753	Marine	VIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDDDRHNRTIDQ*
Ga0098039_11905832	3300006753	Marine	VIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTEVMEVTKGDRDNRTID*
Ga0098039_12597131	3300006753	Marine	VSELTVWSEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFVAVCSAADLEPSAVTKLAHRLLALGPDRGKVYLTEVLEVTKGDRDNRTID*
Ga0098054_11480642	3300006789	Marine	VGAPPGEPALGNQTRVSELGVWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTEVMEVTDRDRHNRTIDQ*
Ga0098055_12403441	3300006793	Marine	VGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTEVMEVTDRDRHNRTIDQ*
Ga0098051_11926162	3300006924	Marine	VIRRALRDLCEPDESLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMLALGPDRGKVYLTKVMEVTTGDRDQRTID*
Ga0098050_11356741	3300006925	Marine	PALGNQTRVSELGVWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMIALGPDRGKVYLTKVMEVTTGDRDQRTID*
Ga0098034_10455852	3300006927	Marine	VSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTEVMEVTKGDRDNRTTD*
Ga0098036_10265432	3300006929	Marine	VIRRALRDLCERDDTLRDDAIAWIGDGKGKDFVEVCIAADLDAGSVAKLAHRMLALGPDRARLYLTRVMEVTTDDRHNRSIDQ*
Ga0114899_10613613	3300008217	Deep Ocean	VIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKVYLTEVMEVTEGDRDNRTTD*
Ga0114905_10287392	3300008219	Deep Ocean	VSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPERGKVYLTQVMEVTEGDRDNRTTD*
Ga0114905_11811242	3300008219	Deep Ocean	VIRRALRDLCEADDKIRHEAIDWIGNGEGEDFREVCSAADLDPGAVAKVARRIIALGPDRGKVYLTKVMEVTEGDRDKRTAD*
Ga0114905_12871592	3300008219	Deep Ocean	VSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTEVMEVTEGDRDNRTTD*
Ga0114902_10219681	3300009413	Deep Ocean	MSDELAIWQSVIRRALRDLCEADDKIRHEAIDWIGNGEGEDFREVCSAADLDPGAVAKVARRIIALGPDRGKVYLTKVLEVTEGDRDKRTAD*
Ga0114908_11059622	3300009418	Deep Ocean	MSDELAIWQSVIRRALRDLCEADDKIRHEAIDWIGNGEGEDFREVCSAADLDPGAVAKVARRIIALGPDRGKVYLTKVMEVTEGDRDKRTAD*
Ga0114911_10614661	3300009603	Deep Ocean	MSDELAIWQSVIRRALRDLCEADDKIRHEAIDWIGNGEGEDFREVCSAADLDPGAVAKVARRIIALGPDRGKVYLTKVMEVTEGDRDKRTA
Ga0114912_10643081	3300009620	Deep Ocean	VSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPERGKVYLTQVMEVT
Ga0114912_11449021	3300009620	Deep Ocean	LTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKVYLTEVMEVTEGDRDNRTTD*
Ga0098047_101394862	3300010155	Marine	VIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTEVMEVTKGDRDNRTTD*
Ga0098047_101741251	3300010155	Marine	NKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGNGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDRDRHNRTIDQ*
Ga0098047_103569061	3300010155	Marine	LGNQTRVSELTVWNEVIRRALRDLCEPDESLRDEAIEWIGDGKGEDFVAVCSAADLEPSAVAKLAHRLLALGPDRGKLYLTEVMEVTKGDRDNRTID*
Ga0181367_10223092	3300017703	Marine	VGAGPGEPPLGNQASVSELAVWNEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTRVMEVTDRDRHNRTIDQ
Ga0181367_10458292	3300017703	Marine	VGAGPGEPPLGNQTRVSELTVWNEVIRRALRDLCEPDESLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMLALGPDRGKVYLTKVMEVTTGDRDQRTID
Ga0181371_10060782	3300017704	Marine	MGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTKVMAVTTGDRDQRTIDQ
Ga0181371_10680451	3300017704	Marine	LCESEASLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTRVMEVTDRDRHNRTIDQ
Ga0181372_10068433	3300017705	Marine	VSELTVWNEVIRRALRDLCEPDESLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMLALGPDRGKVYLTKVMEVTTGDRDQRTID
Ga0181372_10284142	3300017705	Marine	VGAGPGEPALGNQTRVSELAVWNEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEELVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTEVMEVTDRDRHNRTIDQ
Ga0181372_10912971	3300017705	Marine	VGARPGEPALGNQTRVSELGVWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRDKVYLTEVMEVTDR
Ga0181370_10041423	3300017715	Marine	VSELTVWSEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDDDRHNRTIDQ
Ga0181375_10148012	3300017718	Marine	VGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGNGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDRDRHNRTIDQ
Ga0226832_100052927	3300021791	Hydrothermal Vent Fluids	VSELEIWNEVIRRALRDLCEPADKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKVYLTQVMEVTDDDRHNRAVD
Ga0187833_103905932	3300022225	Seawater	NQTRVSELTVWSEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSNADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDDDRHNRTIDQ
Ga0207901_10034712	3300025045	Marine	VSELGIWREVIRRALRDLCEPDASLRDEAVEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDRDGHNRATD
Ga0207902_10001474	3300025046	Marine	VGAGQGEPALGNQASVSELGIWREVIRRALRDLCEPDPSLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTKVMEVTTGDRDQRTID
Ga0207898_10095442	3300025049	Marine	VGTRPGEPALGNKARVSELGIWREVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDDDRPNRTID
Ga0207906_10071601	3300025052	Marine	IRRALRDLCEPDPSLRDEAVEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDSDRHNRATD
Ga0207906_10343261	3300025052	Marine	VIRRALRDLCESDQSLRDEAVEWIGDGEGDNFLAACSDADLEPSAVAKLARRILALGPDRGKLYLTAVMEV
Ga0208012_10102482	3300025066	Marine	VGAGPGEPPLGNQASVSELTVWNEVIRRALRDLCEPDESLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMLALGPDRGKVYLTKVMEVTTGDRDQRTID
Ga0207887_10184841	3300025069	Marine	GGAVGARPGEPALGNQASVSELGIWREVIRRALRDLCEPDASLRDEAVEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDSDRHNRATD
Ga0207887_10680331	3300025069	Marine	VSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRAKVYLTRVMEVTNDD
Ga0208920_10449742	3300025072	Marine	VGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDRDRHNRTIDQ
Ga0208668_10429872	3300025078	Marine	MGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDRDRHNRTIDQ
Ga0208156_10063922	3300025082	Marine	VGAGPGEPPLGNQTRVSELTVWNEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTRVMEVTDRDRHNRTIDQ
Ga0208011_10473872	3300025096	Marine	VGAGPGEPPLGNQASVSELTVWNEVIRRALRDLCEPDPSLRNEAVEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRMLALGPDRGKVYLTKVMEVTTGDRDQRTID
Ga0209349_10123671	3300025112	Marine	VGTGSGQAPLRNQARVSGLSVWNEVIRRALRDLCEPDDSLRDEAIAWVGDGRGEDFTVVCSAAGLEPSAVTKLAHRILALGPDRGKVYLTQVMEVTEGD
Ga0209349_10554962	3300025112	Marine	VSELTVWSEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSNADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDDDRHNRTIDQ
Ga0209349_11201372	3300025112	Marine	VIRRALRDLCETDGKLRDEAIAWIGDGEGEDFTIVCSTADLDPSAVAKLAHRILALGPERGKVYLTKILEVTNNDRHRRATD
Ga0208433_10188861	3300025114	Marine	PDQGEGGAVGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTDRDRHNRTIDQ
Ga0208790_10526012	3300025118	Marine	VGARPGEPALGNQTRVSELGVWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFVDVCSAADLEPSAVAKLAHRLLALGPNRGKVYLTEVMEVTDRDRHNRTIDQ
Ga0209434_10115006	3300025122	Marine	VIRRALRDLCEPNASLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDSDRHNR
Ga0209434_10798693	3300025122	Marine	VSELTVWSEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSNADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDSDRHNR
Ga0209434_11766822	3300025122	Marine	MGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTRVMEVTDRDRHNRTIDQ
Ga0209644_10020962	3300025125	Marine	MGIGPGEPSLGNQARVSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFVAVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTQVMEVTTGDRDQRTID
Ga0209644_11252032	3300025125	Marine	MGIGPGEPSLGNQARVSELTVWNEVIRRALRDLCEPDDSLRDEAIEWIGDGKGEDFVAVCSAADLEPSAVAKLAHRLLALGPDRGKLYLTQVMEVTTGDRDNRTID
Ga0209644_11620681	3300025125	Marine	RLGRIAYHGCPPGGGDHRQRQADQGEGCPLGAGQGEPPLGNQTRVSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVAKLAHRLLALGPDRGKVYLTRVMEVTDDDRHNRTID
Ga0208919_100180718	3300025128	Marine	VIRRALRDLCERDDTLRDDAIAWIGDGKGKDFVEVCIAADLDAGSVAKLAHRMLALGPDRARLYLTRVMEVTTDDRHNRSIDQ
Ga0209128_10670712	3300025131	Marine	MGAGQGEPALGNQASVSELGIWREVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSNADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTEGDRDNRTTD
Ga0209756_10600802	3300025141	Marine	VSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTEVMEVTKGDRDNRTTD
Ga0207894_10264093	3300025268	Deep Ocean	VSELTVWNEVIRRALRDLCEPDASLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDSDRHNRTIDQ
Ga0208449_10500022	3300025280	Deep Ocean	VSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPERGKVYLTQVMEVTEGDRDNRTTD
Ga0208030_10315191	3300025282	Deep Ocean	CAVGAGQGEPPLGNQTRVSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTEVMEVTEGDRDNRTTD
Ga0208684_10715532	3300025305	Deep Ocean	VIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPERGKVYLTQVMEVTEGDRDNRTTD
Ga0208684_11601802	3300025305	Deep Ocean	VIRRALRDLCEADDKIRHEAIDWIGNGEGEDFREVCSAADLDPGAVAKVARRIIALGPDRGKVYLTKVMEVTEGDRDKRTAD
Ga0209757_100103832	3300025873	Marine	MGIGPGEPSLGNQARVSELTVWNEVIRRALRDLCEPDDSLRDEAIEWIGDGKGEDFVAVCSAADLEPSAVAKLAHRLLALGPDRGKVYLTRVMEVTKGDRDNRTID
Ga0209757_100242291	3300025873	Marine	VSELTVWNEVIRRALRDLCEPNASLRDEAVEWIGDGEGEDFLAVCSDADLEPSAVAKLAHRLLALGPDRGKVYLTEVMEVTDDDRHNRTIDQ
Ga0209757_100260093	3300025873	Marine	VSELGVWSEVIRRALRDLCGPDTNLRDEAVEWIGDGKGDDFVAVCSAADLEPSAVAKLAHRILALGPDRGKVYLTRVMEVTEGDRDSRDADR
Ga0209757_100396062	3300025873	Marine	LGAGQGEPPLGNQTRVSELTVWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVAKLAHRLLALGPDRGKVYLTRVMEVTDDDRHNRTID
Ga0209757_101808001	3300025873	Marine	VSELTVWNEVIRRALRDLCEPDDSLRDEAIEWIGDGKGEDFVAVCSAADLEPSAVAKLAHRLLALGPDRAKVYLT
Ga0209757_102063802	3300025873	Marine	VIRRALRDLCETDGKLRDEAIAWIGDGEGEDFTIVCSTADLDPSAVAKLAHRILALGPDRGKVYLTKILEVTNNDRHRRATD
Ga0209757_102208102	3300025873	Marine	VSELTVWSEVIRRALRDLCEPADKLRDEAIEWIGDGKGEDFVAVCSAADLEPSAVTKLAHRLLALGPDRGKVYLTEVMEVTDDDRHNRAVDQ
Ga0209757_102576512	3300025873	Marine	CDLCEPDDSLRDEAIEWIGDGKGEDFVAVCSAADLEPSAVTKLAHRLLALGPDRGKLYLTQVMEVTTGDRDQRTID
Ga0209757_103045342	3300025873	Marine	MGARPGEPALGNKASVSELGIWREVIRRALRDLCESEASLRDEAIEWIGDGKGEDFLAVCSDADLEPSAVAKLAHRMLALGPDRGKVYLTEVMEVTD
Ga0310345_100314672	3300032278	Seawater	MSDELAIWRSVIRRALRDLCEPDDKLRDEAIAWIGDGKGKDFVTVCSSADLEPSAVAKLAHRILALGPDRGKVYLTEVLEVTKNDRDKRSTD
Ga0310345_116097121	3300032278	Seawater	VWSEVIRRALRDLCEPDDKLRDEAIAWIGDGKGEDFTDVCSAANLEPSAVTKLAHRLLALGPDRGKLYLTEVMEVTEGDRDNRTTD
Ga0326756_016905_19_267	3300034629	Filtered Seawater	VIRRALRDLCEPADSLRDEAIEWIGDGKGEDFVTVCSAADLEPSAVAKLAHRILALGPDRGKVYLTQVLEVTEGDRDKRATD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103080

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences