Scaffold PicViral_1001707

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1001707
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8910
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013821	Metagenome	268	Y
F089039	Metagenome	109	Y
F093981	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_100170710	F093981	N/A	VSTNQEARQATCRAATGTALTVDGDWLAMADANGFTTGTINERIMLYFNAALGATWGVAAWDEVAWDGADGDHTNINEAAAAFGESNGITGPGSLFSQLGSF*
PicViral_10017078	F089039	AGGAGG	MAKNSKGFPGPMTRAQMGAYKGIQKAETYPGGLDIRAGNELGFRSKGWRVKRGADKPSTFGMKLRRGY*
PicViral_10017079	F013821	GAGG	MATNQEARQASIRAVTSTTGTHNEDWLALFTARSAPAGTYNERLLSYINTLLSASHTNLEDAMQALAADQSADNFSSMGTFTP*