NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1001136

Scaffold PicViral_1001136


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1001136 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10363
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (46.88%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000567Metagenome / Metatranscriptome1020Y
F009536Metagenome / Metatranscriptome316Y
F013896Metagenome / Metatranscriptome267Y
F080498Metagenome115Y
F090868Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
PicViral_100113610F090868GAGMEKSMKNTEQLYHRLVKRGIINKDIQMKEIKKLIDDVSKYNAKEDVRKIHEKK*
PicViral_100113612F080498N/AMIKKIIIYHFLLFLIVVLFSCAPRTHNIAPKTTEKDNQFIIQLFRNIITQGIDF*
PicViral_100113613F013896GGTGGMICNKCNGNGFIIVKGKTVQCKKCRSQGEIKETLPPPKYLGEDLSSIYQTLYETSLKLSGDNDPGIVAASLMAIGSRIYKTILTPEDYDNIMEKILKTDVEPFKKVTLQ*
PicViral_100113614F000567N/AMKEKLLKLTQKITTWHEKMFTYLTAKSKTSIFFTWLLVFLCLYEIFEHIFIPLALIWWGLR*
PicViral_100113615F009536AGGAMQKGIMSPEKVMKQALNLMPGELREEIKNNLDNTKSYTRLFVKISEEIDSMKVKLPQFAALKNDILRINKQTHSKITDEIKYSVPEAQSTLSVKDVERWLETAKKKDQLIYYTGRTLDHPKSVKEEAVFRKVSNLAMEYDNIPFKNKKYQYRGSVKGEWGCNYKNIVTLVQKKVANLQRDTVWDEDKKKYIPGNIISYPIYNYIMIKI*
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