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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003690 Open in IMG/M |
| Scaffold ID | PicViral_1000482 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29855 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (77.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mid-Cayman Rise, Caribbean Sea | |||||||
| Coordinates | Lat. (o) | 53.0 | Long. (o) | Alt. (m) | Depth (m) | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003898 | Metagenome / Metatranscriptome | 463 | Y |
| F060360 | Metagenome | 133 | Y |
| F094397 | Metagenome | 106 | Y |
| F099891 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| PicViral_100048226 | F060360 | AGAAGG | MPQLFPEQPTLPTTPAVNDPVHLANITEGKATQIVPLLFYDVYQDIALELPEQPNISIVKAEVNKVIRRVNDEIGLWRQLITVSPSSFSTSIDLMSTTNINSETDDEIEDYGRFNHGWDYFSTDNRLRLDDTVIEVDEVYLDNEEWEQVTYAKVKDSNNSTEKYWAQIGRFIFFPKDLSTSSEIIRLRVKKSYSFIENVVGKDAIIDLPESYRQLLISGVLYSLTARPKYKDPDIFGVNKEIFDMELSSLKRQYANLEATYMSRDMTYKY* |
| PicViral_100048232 | F003898 | GGA | MDSLKVTGISTSLGLVYWTDLLSGVLMCVMFAAQIYYLYLKTKKIKEQ* |
| PicViral_10004828 | F099891 | N/A | MDKDKAAKIKQKVNLAKNEGEINFVKEQGKALGLAVDNMKPLELNEPVFDGEPLLSRKNGKYRIDEKHFALMFLEAFQNEDKITGELAPLFTRVEQMIGIPKSTLGDWWRNREDIMSQRATVLHQGLNYVSTAMMVEMMRMAQAMATIDYKEMVNGKPQDMHNFISLFNTMINKFRLLNNQSTSNVAHAHEVELVIPD* |
| PicViral_10004829 | F094397 | GGAG | MKKRKNIDGNFRGWEDIFFIKIKKGLNKFFESPFKRGKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |