Scaffold Ga0001194_100711

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0001194_100711

Scaffold Ga0001194_100711

Overview

Basic Information
Taxon OID	3300003672 Open in IMG/M
Scaffold ID	Ga0001194_100711 Open in IMG/M
Source Dataset Name	Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - CR2A Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	593
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Mat Communities From Elkhorn Slough, Moss Landing, Ca, That Are H2-evolving And Photosynthetic

Source Dataset Sampling Location
Location Name	Elkhorn Slough, Moss Landing, CA
Coordinates	Lat. (^o)	33.8	Long. (^o)	-121.8	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014631	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0001194_1007111	F014631	N/A	VPSDPMDCSLSDRHARPELGIRIGSDVGPLLPAAGLIQLRIVALVLVRSPFR*

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